Browse Element(s) Details


OsAffx.2022.1.S1_at

Description tigr:9629.m01681
TID=OsAffx.2022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=zwillepinhead, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1686011/11Argonaute AGO1 protein, putative
LOC_Os06g111101/11transposon protein, putative, unclassified
LOC_Os12g203001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g065401/11retrotransposon protein, putative, unclassified
LOC_Os12g216241/11retrotransposon protein, putative, unclassified
LOC_Os05g036801/11retrotransposon protein, putative, unclassified
LOC_Os01g478501/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16830OsAffx.1319.1.S1_at11/111+9595829..9599229transposon protein, putative, Mariner sub-class
LOC_Os01g16840OsAffx.26789.1.S1_at11/111+9599925..9600965microneme protein Sm70, putative
LOC_Os01g16850NANA1+9610432..9622035retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16860OsAffx.2022.1.S1_at11/111+9623957..9624974Argonaute AGO1 protein, putative
LOC_Os01g16870Os.12351.1.S1_at11/111+9628112..9635659Piwi domain containing protein, expressed
LOC_Os01g16880NANA1+9641271..9650270expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2022.1.S1_at--243--10231Chr01:9624908..9624932 (25 bp)
TTTGGCACGAGAGGGCAGTCGATAC
LOC_Os01g16860
OsAffx.2022.1.S1_at--809--8251Chr01:9624895..9624919 (25 bp)
GGCAGTCGATACAGCTTTTGACGAA
LOC_Os01g16860
OsAffx.2022.1.S1_at--480--10731Chr01:9624878..9624902 (25 bp)
TTGACGAACCACTTCAGAGTCTCTG
LOC_Os01g16860
OsAffx.2022.1.S1_at--545--9651Chr01:9624865..9624889 (25 bp)
TCAGAGTCTCTGTCCGGCGAATGGA
LOC_Os01g16860
OsAffx.2022.1.S1_at--918--5271Chr01:9624847..9624871 (25 bp)
GAATGGACGGCCACTTCTACCATTA
LOC_Os01g16860
OsAffx.2022.1.S1_at--178--2051Chr01:9624712..9624859 (25 bp)
ACTTCTACCATTACCACGTGGAGGT
LOC_Os01g16860
OsAffx.2022.1.S1_at--443--5611Chr01:9624632..9624656 (25 bp)
GACAAGCTGCAGGAGACCTATGCGT
LOC_Os01g16860
OsAffx.2022.1.S1_at--385--5011Chr01:9624624..9624648 (25 bp)
GCAGGAGACCTATGCGTCGGAGCTC
LOC_Os01g16860
OsAffx.2022.1.S1_at--206--9331Chr01:9624601..9624625 (25 bp)
TCGCCGGCAGGGAGTTCGCCTACAA
LOC_Os01g16860
OsAffx.2022.1.S1_at--267--9491Chr01:9624546..9624570 (25 bp)
TCTGCTGCAGACGAAGCACCAGTTC
LOC_Os01g16860
OsAffx.2022.1.S1_at--495--4477Chr09:3108865..3109273 (25 bp)
GCCTCCTCATCTGGAAGGACGACGA
LOC_Os09g06540
Target Sequence 
TTTGGCACGAGAGGGCAGTCGATACAGCTTTTGACGAACCACTTCAGAGTCTCTGTCCGGCGAATGGACGGCCACTTCTA
CCATTACCACGTGGAGGTGAAGTACGAGGACGGCGGCCCCGTGGAGGCGAAAGGCGTGTGCCGGCGAGTCGTCGACAAGC
TGCAGGAGACCTATGCGTCGGAGCTCGCCGGCAGGGAGTTCGCCTACAACGGCGAGAAGGGCCTCTTCACCGCCGGAGCT
CTGCTGCAGACGAAGCACCAGTTCGTCGTCGTCATGGAGGACGCCTCCTCATCTGGAAGGACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis