Browse Element(s) Details


OsAffx.26789.1.S1_at

Description tigr:9629.m01678
TID=OsAffx.26789.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1684011/11microneme protein Sm70, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16820OsAffx.19542.3.S1_x_at5/111+9571752..9575692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16830OsAffx.1319.1.S1_at11/111+9595829..9599229transposon protein, putative, Mariner sub-class
LOC_Os01g16840OsAffx.26789.1.S1_at11/111+9599925..9600965microneme protein Sm70, putative
LOC_Os01g16850NANA1+9610432..9622035retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16860OsAffx.2022.1.S1_at11/111+9623957..9624974Argonaute AGO1 protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26789.1.S1_at--631--4171Chr01:9600478..9600498 (21 bp)
CCCTGACTTTGAGGACGAGACCTGC
LOC_Os01g16840
OsAffx.26789.1.S1_at--812--3851Chr01:9600088..9600496 (25 bp)
CTGACTTTGAGGACGAGACCTGCGT
LOC_Os01g16840
OsAffx.26789.1.S1_at--655--5691Chr01:9600086..9600494 (25 bp)
GACTTTGAGGACGAGACCTGCGTCA
LOC_Os01g16840
OsAffx.26789.1.S1_at--1098--2031Chr01:9600085..9600493 (25 bp)
ACTTTGAGGACGAGACCTGCGTCAT
LOC_Os01g16840
OsAffx.26789.1.S1_at--77--8371Chr01:9600380..9600404 (25 bp)
GGCGGTGGCCTCGACTCCGAGCTAC
LOC_Os01g16840
OsAffx.26789.1.S1_at--179--2931Chr01:9600050..9600074 (25 bp)
AAGGACGAGGCATGTGGCAGCGACC
LOC_Os01g16840
OsAffx.26789.1.S1_at--1068--4051Chr01:9600045..9600069 (25 bp)
CGAGGCATGTGGCAGCGACCACGAT
LOC_Os01g16840
OsAffx.26789.1.S1_at--342--1651Chr01:9600032..9600056 (25 bp)
AGCGACCACGATTCTGAGCTGCCTC
LOC_Os01g16840
OsAffx.26789.1.S1_at--20--1891Chr01:9600025..9600049 (25 bp)
ACGATTCTGAGCTGCCTCCCGATGG
LOC_Os01g16840
OsAffx.26789.1.S1_at--255--111Chr01:9600022..9600046 (25 bp)
ATTCTGAGCTGCCTCCCGATGGTGT
LOC_Os01g16840
OsAffx.26789.1.S1_at--1028--9471Chr01:9600020..9600044 (25 bp)
TCTGAGCTGCCTCCCGATGGTGTAG
LOC_Os01g16840
Target Sequence 
CCCTGACTTTGAGGACGAGACCTGCGTCATCCCTGACTCCGAGGAGGAGGCATGTGGCGGTGGCCTCGACTCCGAGCTAC
CTCCCGACAGCTGCGTCGTCCCTGATTCCGAGGAGGAGGCGTGTGGCGACGACCCTGACTCCGAGCTGCCTCCCGACGGC
TGTGTCGTCCCTGATTCCGAGGAGGAGGCGTGTGGTGGTGACCCCGACTCCCAGCTGCCTCCCGACAGCTGCGTCGTCCC
TGATTCCGAGGAGGAGGCGTGTGGCGGCGACCCCGACTCCGAGCTGCCTCCCGACGGCTACGTCGTCCCTGATTCCGAGG
AGGAGGCGTGTGGCGGCGACCACGACTCCGAGCTGCCTCCCGACGGCTGCGTCATCCCTGACTCAAAGGACGAGGCATGT
GGCAGCGACCACGATTCTGAGCTGCCTCCCGATGGTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis