Browse Element(s) Details


Os.14646.1.S1_at

Description gb:AK066958.1
DB_XREF= gi:32976976
TID=Os.14646.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091F17, full insert sequence.
FL= gb:AK066958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3445011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34410OsAffx.12928.1.S1_at2/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.14131.1.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.30458.2.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410Os.51959.1.S2_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34420Os.51959.1.S1_at2/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420OsAffx.14131.1.S1_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420Os.51959.1.S2_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34430Os.22598.1.S1_at11/114+20659887..20664213transposon protein, putative, unclassified, expressed
LOC_Os04g34440Os.48106.1.A1_at11/114+20664871..20671082ubiquitin interaction motif-containing protein, putative, expressed
LOC_Os04g34450Os.14646.1.S1_at11/114+20675204..20685081expressed protein
LOC_Os04g34460Os.8479.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.8479.1.S1_s_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.49149.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34470OsAffx.14133.1.S1_at11/114+20689847..20690305hypothetical protein
LOC_Os04g34480NANA4+20693397..20693994Plastocyanin-like domain containing protein
LOC_Os04g34490Os.54933.1.S1_at11/114+20694888..20698204Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34500OsAffx.22668.1.S1_x_at6/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.22668.1.S1_at5/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.12589.1.S1_at3/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34510Os.55435.1.S1_at10/114+20704855..20705437expressed protein
LOC_Os04g34520OsAffx.14134.1.S1_at10/114+20705951..20706916hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14646.1.S1_at--783--6091Chr04:20684481..20684505 (25 bp)
GAGTCAACTCTTCAATCAACGCCTG
LOC_Os04g34450
Os.14646.1.S1_at--157--8351Chr04:20684510..20684534 (25 bp)
GGCTGGATCAAAACCTGCTGCTTAT
LOC_Os04g34450
Os.14646.1.S1_at--751--9151Chr04:20684552..20684576 (25 bp)
TGCGACACACCAACCAGTTCAAGTG
LOC_Os04g34450
Os.14646.1.S1_at--1085--10491Chr04:20684569..20684593 (25 bp)
TTCAAGTGTCCTCCCCAAGTTTTAG
LOC_Os04g34450
Os.14646.1.S1_at--645--6011Chr04:20684663..20684687 (25 bp)
GAGAGAACCATTCCTTCATCTACGT
LOC_Os04g34450
Os.14646.1.S1_at--980--4331Chr04:20684728..20684752 (25 bp)
CCATGCTTTCGTTTGTTACCTGTAA
LOC_Os04g34450
Os.14646.1.S1_at--111--5871Chr04:20684865..20684889 (25 bp)
GAGCCTGGAATTATTGTCGCCATTT
LOC_Os04g34450
Os.14646.1.S1_at--149--3871Chr04:20684926..20684950 (25 bp)
CTGAGTGTCAGATTTGTCGGTGGCT
LOC_Os04g34450
Os.14646.1.S1_at--104--10451Chr04:20684961..20684985 (25 bp)
TTAGTCATTACCACCATTGGACCTC
LOC_Os04g34450
Os.14646.1.S1_at--977--2291Chr04:20685012..20685036 (25 bp)
AAATGTGTCTTGTACCAGGCTGAAA
LOC_Os04g34450
Os.14646.1.S1_at--573--8071Chr04:20685045..20685069 (25 bp)
GGAGCACGCGATCGATCTTATTTGA
LOC_Os04g34450
Target Sequence 
GAGTCAACTCTTCAATCAACGCCTGCACCGGCTGGATCAAAACCTGCTGCTTATCAGTCATACAAGGCACCTGCGACACA
CCAACCAGTTCAAGTGTCCTCCCCAAGTTTTAGAAGGCAGCAGACAAGTACAAATTCACNTGCAGCCTCGAGGCGGCGTC
GATGAAGAAAATGCATCATGTTGAGAGAACCATTCCTTCATCTACGTGCCTCTTCCNTAAATTCTCCTCTTTCTTTGTTC
ATCTTTCCCATGCTTTCGTTTGTTACCTGTAATTAGNATCATGTTGTCATGTATTATGAATTTTGACCCATTCTTTTGGT
GTTGTAAGATAAAAGGGGTGTACAGGGGTTGCTGTACGGGGCTATCTACTTGTATAATTTCCATGAGCCTGGAATTATTG
TCGCCATTTTTTCTAAAGACNCCATCTCAACTTAACTTTCTGGAACTGAGTGTCAGATTTGTCGGTGGCTGACGNACTCA
TTAGTCATTACCACCATTGGACCTCACTCTTCCGATTTTCTATGCGGACTTAAATGTGTCTTGTACCAGGCTGAAACGAT
AGTTGGAGCACGCGATCGATCTTATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis