Browse Element(s) Details


OsAffx.266.1.S1_at

Description gb:NM_195797.1
DB_XREF= gi:37532953
TID=OsAffx.266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1325D05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1883011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g244201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18790OsAffx.25936.2.S1_x_at11/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.1.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.7.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.5.S1_x_at2/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18800OsAffx.18294.1.S1_at10/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.23696.1.S1_x_at1/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.988.1.S1_at1/1110+9236095..9237547hypothetical protein
LOC_Os10g18810NANA10+9243686..9244075hypothetical protein
LOC_Os10g18820Os.46700.1.S1_at11/1110+9251735..9252982Dirigent-like protein, expressed
LOC_Os10g18830OsAffx.266.1.S1_at11/1110+9253893..9257475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.265.1.S1_at11/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.8264.1.S1_at3/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18850OsAffx.20513.1.S1_at11/1110+9275834..9276787hypothetical protein
LOC_Os10g18860OsAffx.8275.1.S1_at11/1110+9279141..9283366retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.266.1.S1_at--9--4891Chr10:9254796..9254820 (25 bp)
GCACAAGCAAAAGATGACTACGGTC
LOC_Os10g18830
OsAffx.266.1.S1_at--264--5691Chr10:9254781..9254805 (25 bp)
GACTACGGTCACACAGTACATCGGA
LOC_Os10g18830
OsAffx.266.1.S1_at--1158--871Chr10:9254644..9254743 (25 bp)
AGGCCGCGTACAACTTTAAGGATCA
LOC_Os10g18830
OsAffx.266.1.S1_at--820--2071Chr10:9254617..9254641 (25 bp)
ACATATGTTTCCTTATCGACCCAAA
LOC_Os10g18830
OsAffx.266.1.S1_at--190--10431Chr10:9254605..9254629 (25 bp)
TTATCGACCCAAAGGCAGGCGTGGT
LOC_Os10g18830
OsAffx.266.1.S1_at--471--4211Chr10:9254567..9254591 (25 bp)
CCCCTTGATTATTCTCACACGATGT
LOC_Os10g18830
OsAffx.266.1.S1_at--55--7611Chr10:9254217..9254241 (25 bp)
GGGCACTATCCTCTGCAGGTATTAT
LOC_Os10g18830
OsAffx.266.1.S1_at--767--9611Chr10:9253981..9254005 (25 bp)
TCATCCACCGCGAGTGTTATCATGT
LOC_Os10g18830
OsAffx.266.1.S1_at--1012--10151Chr10:9253964..9253988 (25 bp)
TATCATGTCATAGGCAAGTACTTCG
LOC_Os10g18830
OsAffx.266.1.S1_at--760--1171Chr10:9253948..9253972 (25 bp)
AGTACTTCGACCAAGACAGCATCCT
LOC_Os10g18830
OsAffx.266.1.S1_at--930--552Chr01:13751043..13751067 (25 bp)
ATCCTGGCTACAAGCGATGAATTCA
LOC_Os01g24420
Target Sequence 
GCACAAGCAAAAGATGACTACGGTCACACAGTACATCGGACGAGCCTTCTTGCACTTCCAAAATAAGAGAGTCATCAAGG
CCGCGTACAACTTTAAGGATCAATACATATGTTTCCTTATCGACCCAAAGGCAGGCGTGGTGACGGTCCTGGACCCCCTT
GATTATTCTCACACGATGTATAGACATTTTCTACAAATCTTACAATATGCGTACAATTACTACAAGTTCAAGGGTGGAGA
ACAGACTAAAACAAGGGAGAAGCTACTAGTACATACGTATTGGCCGTGTCACAAGCAACCTAGGGGCACTATCCTCTGCA
GGTATTATGCATGCGAATACCTCCGGGTTAATGGGAGGTACAGGGTTAATGCAGAGGATTTGCCTAGAATTGAACGTCGA
GAAGGATTCGATGATACAAGCATTAAAAATGTACAACAGGACCTCTGCCACTTCATCCACCGCGAGTGTTATCATGTCAT
AGGCAAGTACTTCGACCAAGACAGCATCCTGGCTACAAGCGATGAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis