Browse Element(s) Details


Os.8510.1.S1_at

Description gb:AU096560
DB_XREF= gi:8859242
DB_XREF=AU096560
CLONE=S14302
TID=Os.8510.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance protein (OSJNBa0027A14.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1876011/11jasmonate-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18730Os.24831.1.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_s_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.4.S1_x_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18740Os.26886.1.S1_x_at3/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18740Os.26886.3.S1_x_at1/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18750OsAffx.6693.1.S1_at11/1110+9203138..9204482hypothetical protein
LOC_Os10g18750OsAffx.10222.1.S1_x_at2/1110+9203138..9204482hypothetical protein
LOC_Os10g18750OsAffx.21755.1.S1_x_at1/1110+9203138..9204482hypothetical protein
LOC_Os10g18750Os.51841.1.S1_x_at1/1110+9203138..9204482hypothetical protein
LOC_Os10g18760Os.8510.1.S1_at11/1110+9210026..9211586jasmonate-induced protein, putative, expressed
LOC_Os10g18770OsAffx.22708.2.S1_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.2.S1_x_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.5.S1_x_at6/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.1.S1_x_at4/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.4.S1_x_at11/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.3.S1_x_at7/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18790OsAffx.25936.2.S1_x_at11/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.1.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.7.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.5.S1_x_at2/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18800OsAffx.18294.1.S1_at10/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.23696.1.S1_x_at1/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.988.1.S1_at1/1110+9236095..9237547hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8510.1.S1_at--464--6251Chr10:9210670..9210694 (25 bp)
GATGGGCACTACTCCGGCAGAAGGT
LOC_Os10g18760
Os.8510.1.S1_at--884--7091Chr10:9210693..9210717 (25 bp)
GTCAGTGGGCCATCTCTAGTGGAAC
LOC_Os10g18760
Os.8510.1.S1_at--977--3111Chr10:9210723..9210747 (25 bp)
AATTTGCCTTGGCTCATGGCATTAT
LOC_Os10g18760
Os.8510.1.S1_at--775--1211Chr10:9210757..9210781 (25 bp)
AGTTATCCAGTCAACTCCTGGCGAA
LOC_Os10g18760
Os.8510.1.S1_at--974--9951Chr10:9211206..9211230 (25 bp)
TACCGATGGGAAGTCCTGGACACTC
LOC_Os10g18760
Os.8510.1.S1_at--858--2671Chr10:9211246..9211270 (25 bp)
AAGCTACTTCCATGCATGGTTTTGT
LOC_Os10g18760
Os.8510.1.S1_at--163--7311Chr10:9211269..9211293 (25 bp)
GTGCTGTTCCAGTGTGTTACTTTGT
LOC_Os10g18760
Os.8510.1.S1_at--1111--7591Chr10:9211314..9211338 (25 bp)
GGGCACCAAAGCATTATTTCTCAAG
LOC_Os10g18760
Os.8510.1.S1_at--135--431Chr10:9211350..9211374 (25 bp)
ATCATATCCTACTTCTCAAATCGAG
LOC_Os10g18760
Os.8510.1.S1_at--352--1011Chr10:9211406..9211430 (25 bp)
AGGTTCTATATCGATCCTGGCCTAC
LOC_Os10g18760
Os.8510.1.S1_at--885--3911Chr10:9211422..9211446 (25 bp)
CTGGCCTACTCAAAGATCCGTTGTG
LOC_Os10g18760
Target Sequence 
GATGGGCACTACTCCGGCAGAAGGTCAGTGGGCCATCTCTAGTGGAACAGGGGAATTTGCCTTGGCTCATGGCATTATCA
AGCAGAAAGTTATCCAGTCAACTCCTGGCGAAAATGTTAAAGAACTTCATGTCCATGCATTCTACACTCCAATGAATGAT
TCTGTGGTTCCTGGCGCTACCGATGGGAAGTCCTGGACACTCGGGGCTTAAAACCAAAAGCTACTTCCATGCATGGTTTT
GTGCTGTTCCAGTGTGTTACTTTGTATTGTGACGAACAATAATTTGGGCACCAAAGCATTATTTCTCAAGAGTAGGAAAA
AATCATATCCTACTTCTCAAATCGAGTAAAATTTGAAGAATGGTTCATGGAAACGACAGGTTCTATATCGATCCTGGCCT
ACTCAAAGATCCGTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis