Browse Element(s) Details


OsAffx.6693.1.S1_at

Description tigr:9638.m01567
TID=OsAffx.6693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1875011/11hypothetical protein
LOC_Os09g203201/11DnaJ domain containing protein
LOC_Os11g308901/11Sulfotransferase domain containing protein
LOC_Os02g402501/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18710OsAffx.16467.1.S1_at6/1110+9181256..9182327hypothetical protein
LOC_Os10g18710Os.26886.2.S1_s_at3/1110+9181256..9182327hypothetical protein
LOC_Os10g18710Os.26886.6.S1_s_at2/1110+9181256..9182327hypothetical protein
LOC_Os10g18720NANA10+9182526..9184797hypothetical protein
LOC_Os10g18730Os.24831.1.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_s_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.4.S1_x_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18740Os.26886.1.S1_x_at3/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18740Os.26886.3.S1_x_at1/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18750OsAffx.6693.1.S1_at11/1110+9203138..9204482hypothetical protein
LOC_Os10g18750OsAffx.10222.1.S1_x_at2/1110+9203138..9204482hypothetical protein
LOC_Os10g18750OsAffx.21755.1.S1_x_at1/1110+9203138..9204482hypothetical protein
LOC_Os10g18750Os.51841.1.S1_x_at1/1110+9203138..9204482hypothetical protein
LOC_Os10g18760Os.8510.1.S1_at11/1110+9210026..9211586jasmonate-induced protein, putative, expressed
LOC_Os10g18770OsAffx.22708.2.S1_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.2.S1_x_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.5.S1_x_at6/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.1.S1_x_at4/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.4.S1_x_at11/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.3.S1_x_at7/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6693.1.S1_at--296--10555Chr06:1881423..1881447 (25 bp)
TTCATTATTGGACCATTTGCTCAGG
NONE
OsAffx.6693.1.S1_at--327--8532Chr06:1881431..1881483 (25 bp)
TGGACCATTTGCTCAGGTGAACAAT
NONE
OsAffx.6693.1.S1_at--531--4831Chr10:9204410..9204434 (25 bp)
GCTCAGGTGAACAATTTGGTGCCAT
LOC_Os10g18750
OsAffx.6693.1.S1_at--1040--10211Chr10:9204396..9204420 (25 bp)
TTTGGTGCCATACAGACGAACTCCT
LOC_Os10g18750
OsAffx.6693.1.S1_at--1110--5451Chr10:9204233..9204403 (25 bp)
GAACTCCTGGAATATTGACCGGTCA
LOC_Os10g18750
OsAffx.6693.1.S1_at--804--96314Chr11:17472653..17472677 (25 bp)
TCAGACCGGCTTGTGTTGAGCGGTC
LOC_Os11g30890
OsAffx.6693.1.S1_at--529--8811Chr10:9204175..9204199 (25 bp)
TGTTGAGCGGTCAGAACGGCCAGCC
LOC_Os10g18750
OsAffx.6693.1.S1_at--472--2411Chr10:9203207..9203231 (25 bp)
AAACAAGCCTCATGTAATACTGCCT
LOC_Os10g18750
OsAffx.6693.1.S1_at--945--751Chr10:9203196..9203220 (25 bp)
ATGTAATACTGCCTATTCCTCTTTC
LOC_Os10g18750
OsAffx.6693.1.S1_at--141--10231Chr10:9203183..9203207 (25 bp)
TATTCCTCTTTCGTCCAGTGACGCA
LOC_Os10g18750
OsAffx.6693.1.S1_at--40--3471Chr10:9203168..9203192 (25 bp)
CAGTGACGCAGTTCCTAATTGCTCA
LOC_Os10g18750
Target Sequence 
TTCATTATTGGACCATTTGCTCAGGTGAACAATTTGGTGCCATACAGACGAACTCCTGGAATATTGACCGGTCAGAAAAG
GCGGTGGTTGCCGGTCAGACCGGCTTGTGTTGAGCGGTCAGAACGGCCAGCCCGCGGTGACTCGATGCCACGGGAGAGTA
TTTGCGGTGATGGACCGGGAGTCGGCTTGGTGAGAACGGAAGAAAACCCAAACAAGCCTCATGTAATACTGCCTATTCCT
CTTTCGTCCAGTGACGCAGTTCCTAATTGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis