Browse Element(s) Details


Os.47508.1.A1_s_at

Description gb:BX899932
DB_XREF= gi:40490448
DB_XREF=BX899932
CLONE=p810g08p3
TID=Os.47508.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.47508 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1668011/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed
LOC_Os01g16680Os.47508.1.A1_s_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680OsAffx.2475.1.S1_x_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680Os.11892.1.S1_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16690NANA1+9477984..9480122retrotransposon protein, putative, unclassified
LOC_Os01g16700NANA1+9480813..9482828retrotransposon protein, putative, LINE subclass
LOC_Os01g16714Os.56223.1.S1_at11/111+9485603..9490742Flavin-binding monooxygenase-like family protein, expressed
LOC_Os01g16730OsAffx.26706.1.S1_x_at9/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.3.S1_x_at8/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.1.S1_at1/111+9493555..9499714hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47508.1.A1_s_at--222--7751Chr01:9471677..9471701 (25 bp)
GGTGTGCATAGATCCAATGGTATGT
LOC_Os01g16680
Os.47508.1.A1_s_at--269--9591Chr01:9471707..9471731 (25 bp)
TCTTGAAGCAGTTGTAAATGGAATC
LOC_Os01g16680
Os.47508.1.A1_s_at--39--5511Chr01:9471733..9471757 (25 bp)
GAAACACTGTAAATACGGGTACACA
LOC_Os01g16680
Os.47508.1.A1_s_at--594--7691Chr01:9471749..9471773 (25 bp)
GGGTACACACCCATTTACATGAGCG
LOC_Os01g16680
Os.47508.1.A1_s_at--273--2171Chr01:9471755..9471779 (25 bp)
ACACCCATTTACATGAGCGTGGCAG
LOC_Os01g16680
Os.47508.1.A1_s_at--247--10491Chr01:9471763..9471787 (25 bp)
TTACATGAGCGTGGCAGAGGTATAT
LOC_Os01g16680
Os.47508.1.A1_s_at--1096--9531Chr01:9471844..9471868 (25 bp)
TCTTTTTACCCTTTGAAGCTGCCCT
LOC_Os01g16680
Os.47508.1.A1_s_at--281--5411Chr01:9471858..9471882 (25 bp)
GAAGCTGCCCTCAGTACAGTTTTGT
LOC_Os01g16680
Os.47508.1.A1_s_at--1111--4531Chr01:9471864..9471888 (25 bp)
GCCCTCAGTACAGTTTTGTGTGAAA
LOC_Os01g16680
Os.47508.1.A1_s_at--84--2551Chr01:9471887..9471911 (25 bp)
AACTGAACCAGTGAGTGATTCTTTT
LOC_Os01g16680
Os.47508.1.A1_s_at--4--3471Chr01:9471895..9471919 (25 bp)
CAGTGAGTGATTCTTTTGTTGTAAC
LOC_Os01g16680
Target Sequence 
GGTGTGCATAGATCCAATGGTATGTNNNATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTA
CACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTNACACGGTGATTTTGTAACACAC
AGAGGGCAGGATTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGA
TTCTTTTGTTGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47508.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis