Browse Element(s) Details


Os.56223.1.S1_at

Description gb:AK109645.1
DB_XREF= gi:32994854
TID=Os.56223.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-H02, full insert sequence.
FL= gb:AK109645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1671411/11Flavin-binding monooxygenase-like family protein, expressed
LOC_Os01g167503/11Flavin-binding monooxygenase-like family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16680Os.47508.1.A1_s_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680OsAffx.2475.1.S1_x_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680Os.11892.1.S1_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16690NANA1+9477984..9480122retrotransposon protein, putative, unclassified
LOC_Os01g16700NANA1+9480813..9482828retrotransposon protein, putative, LINE subclass
LOC_Os01g16714Os.56223.1.S1_at11/111+9485603..9490742Flavin-binding monooxygenase-like family protein, expressed
LOC_Os01g16730OsAffx.26706.1.S1_x_at9/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.3.S1_x_at8/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.1.S1_at1/111+9493555..9499714hypothetical protein
LOC_Os01g16740OsAffx.28514.4.S1_s_at11/111+9500034..9506892transposon protein, putative, unclassified
LOC_Os01g16740OsAffx.28514.2.S1_x_at10/111+9500034..9506892transposon protein, putative, unclassified
LOC_Os01g16750Os.56223.1.S1_at3/111+9509763..9511880Flavin-binding monooxygenase-like family protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56223.1.S1_at--700--1871Chr01:9489582..9489606 (25 bp)
ACGATGTACCCGGTCGTGGACGTCG
LOC_Os01g16714
Os.56223.1.S1_at--408--5072Chr01:9510619..9510643 (25 bp)
GCACCTTCGCCAAGATCAGGTCCGG
LOC_Os01g16750
Os.56223.1.S1_at--6--9631Chr01:9489622..9489646 (25 bp)
TCAGGTCCGGCGAGATCCGCGTCCT
LOC_Os01g16714
Os.56223.1.S1_at--84--5091Chr01:9489745..9489767 (23 bp)
GCACCACCAAGCACTGGCTCAAGAG
LOC_Os01g16714
Os.56223.1.S1_at--647--3952Chr01:9511701..9511725 (25 bp)
CGGAGCTACCCGGATCACTGGAAGG
LOC_Os01g16750
Os.56223.1.S1_at--885--1432Chr01:9511729..9511753 (25 bp)
AGAACGGGCTGTACTGCGCCGGGAT
LOC_Os01g16750
Os.56223.1.S1_at--72--971Chr01:9490507..9490531 (25 bp)
AGGACGCGGAGCACATCGCCGACGA
LOC_Os01g16714
Os.56223.1.S1_at--730--1511Chr01:9490554..9490578 (25 bp)
AGCAGCAAGCCTACCCACAACAATG
LOC_Os01g16714
Os.56223.1.S1_at--795--2651Chr01:9490560..9490584 (25 bp)
AAGCCTACCCACAACAATGGCTCGG
LOC_Os01g16714
Os.56223.1.S1_at--93--10091Chr01:9490650..9490674 (25 bp)
TAGGTGTAGCTTTTATACTATGATT
LOC_Os01g16714
Os.56223.1.S1_at--385--6531Chr01:9490671..9490695 (25 bp)
GATTTTGTTTCTGAGTTTGTGGATG
LOC_Os01g16714
Target Sequence 
ACGATGTACCCGGTCGTGGACGTCGGCACCTTCGCCAAGATCAGGTCCGGCGAGATCCGCGTCCTCCCGGCCGCCATCAA
GGGCGTCCGCGGCCGCGACGTCGAGTTCGCCGACGGCCAGCGCCACGCCTTCGACGCCNTCGTCTTCGCCACCGGNTACC
GGAGCACCACCAAGCACTGGCTCAAGAGNGATGACGGGCTGATCGGCGACGACGGGATGGCGGGGCGGAGCTACCCGGAT
CACTGGAAGGGGGAGAACGGGCTGTACTGCGCCGGGATGGTGAGGAGGGGAATCTACGGCAGCTANGAGGACGCGGAGCA
CATCGCCGACGACATCAGCAAGCAACTNCGGAGCAGCAGCAAGCCTACCCACAACAATGGCTCGGNCTAGAAAGANATTN
NATCNAGCTGATGANGCTCTCCCCCNTGGACCNNGNNNTNGNTATTATATTAGGTGTAGCTTTTATACTATGATTTTGTT
TCTGAGTTTGTGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis