Browse Element(s) Details


OsAffx.28514.2.S1_x_at

Description tigr:9635.m01900
TID=OsAffx.28514.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1884011/11transposon protein, putative, unclassified
LOC_Os05g0309010/11transposon protein, putative, unclassified
LOC_Os01g1674010/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18800NANA7+11127860..11129359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18810OsAffx.10633.1.S1_at5/117+11130636..11133622retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18820OsAffx.28514.4.S1_s_at11/117+11144578..11147132hypothetical protein
LOC_Os07g18830OsAffx.21264.1.S1_x_at1/117+11149159..11149374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18840OsAffx.28514.2.S1_x_at11/117+11150669..11154641transposon protein, putative, unclassified
LOC_Os07g18850OsAffx.26706.3.S1_x_at10/117+11154937..11161085hypothetical protein
LOC_Os07g18850OsAffx.26706.1.S1_x_at6/117+11154937..11161085hypothetical protein
LOC_Os07g18850OsAffx.26706.1.S1_at1/117+11154937..11161085hypothetical protein
LOC_Os07g18860NANA7+11167126..11167653hypothetical protein
LOC_Os07g18874Os.49096.1.S1_at11/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18874Os.49096.2.S1_x_at11/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18874Os.49096.2.S1_at11/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18874Os.49930.1.S2_x_at1/117+11169203..11181271ABC-2 type transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28514.2.S1_x_at--9--6673Chr07:11154038..11154062 (25 bp)
GTTGAATACTATGTTCTCTCATGAA
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--858--953Chr07:11154068..11154092 (25 bp)
AGGAGCAGATAAACAACAGGGACAT
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--988--3092Chr07:11154102..11154126 (25 bp)
AATAGTTTCAGTCCAACAGCAGAAG
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--372--5533Chr07:11154141..11154165 (25 bp)
GAAAACACACACATTCATGGAGATA
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--1140--6353Chr07:11154192..11154216 (25 bp)
GATCCAGATATAGCAAATTCAAAAG
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--289--8012Chr07:11154217..11154241 (25 bp)
GGAGGCCTAAGCAAAGATATAAAAC
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--933--5533Chr07:11154267..11154291 (25 bp)
GAAACAAATCACTGCAGTCACTGCG
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--842--1913Chr07:11154286..11154310 (25 bp)
ACTGCGGTAGGACAGAACATACTTT
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--365--2493Chr07:11154301..11154325 (25 bp)
AACATACTTTTCCAACATGTCCCTT
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--331--773Chr07:11154317..11154341 (25 bp)
ATGTCCCTTCAAGCATATTGAGTTT
LOC_Os07g18840
OsAffx.28514.2.S1_x_at--958--7113Chr07:11154547..11154571 (25 bp)
GTCATCAAGACGAAGTACAACAGTT
LOC_Os07g18840
Target Sequence 
GTTGAATACTATGTTCTCTCATGAATTTGAAGGAGCAGATAAACAACAGGGACATGAAGAGAACAATAGTTTCAGTCCAA
CAGCAGAAGTGAATGAAAAATCAGAAAACACACACATTCATGGAGATATCAGAAATGAAGAAGATTACATTGAAGATCCA
GATATAGCAAATTCAAAAGGGAGGCCTAAGCAAAGATATAAAACAATTAGAGAGCAAATAGAGGACAAAGAAACAAATCA
CTGCAGTCACTGCGGTAGGACAGAACATACTTTTCCAACATGTCCCTTCAAGCATATTGAGTTTGATTTGGCAAGGAAAA
GGAAAAGAAAAATTCCAAGTAAACCACAAAAGAGTGGAGAAGAAGAGAAGAAGGAAGCTACTTCAAAGAAAAGAAAACCA
AACAAAAAGGAGAATACAGAAATAGGCAAAAGTCATCAAGACGAAGTACAACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28514.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis