Browse Element(s) Details


Os.49096.1.S1_at

Description gb:AK100175.1
DB_XREF= gi:32985384
TID=Os.49096.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027L20, full insert sequence.
FL= gb:AK100175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1887411/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18820OsAffx.28514.4.S1_s_at11/117+11144578..11147132hypothetical protein
LOC_Os07g18830OsAffx.21264.1.S1_x_at1/117+11149159..11149374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18840OsAffx.28514.2.S1_x_at11/117+11150669..11154641transposon protein, putative, unclassified
LOC_Os07g18850OsAffx.26706.3.S1_x_at10/117+11154937..11161085hypothetical protein
LOC_Os07g18850OsAffx.26706.1.S1_x_at6/117+11154937..11161085hypothetical protein
LOC_Os07g18850OsAffx.26706.1.S1_at1/117+11154937..11161085hypothetical protein
LOC_Os07g18860NANA7+11167126..11167653hypothetical protein
LOC_Os07g18874Os.49096.1.S1_at11/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18874Os.49096.2.S1_x_at11/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18874Os.49096.2.S1_at11/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18874Os.49930.1.S2_x_at1/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18890OsAffx.5954.5.S1_x_at7/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18890OsAffx.5954.3.S1_x_at3/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18890OsAffx.5954.1.S1_x_at2/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18890OsAffx.5954.2.S1_at1/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18900NANA7+11198632..11201412hypothetical protein
LOC_Os07g18910NANA7+11202218..11203298retrotransposon protein, putative, unclassified
LOC_Os07g18920OsAffx.22699.1.S1_x_at3/117+11203747..11207816retrotransposon protein, putative, unclassified
LOC_Os07g18920OsAffx.13786.1.S1_x_at2/117+11203747..11207816retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49096.1.S1_at--922--4411Chr07:11180721..11180745 (25 bp)
GCCAGATTTTCTGCTAGGGATAATC
LOC_Os07g18874
Os.49096.1.S1_at--384--7671Chr07:11180737..11180761 (25 bp)
GGGATAATCACTGGCTCTGGTGTAC
LOC_Os07g18874
Os.49096.1.S1_at--386--1051Chr07:11180763..11180787 (25 bp)
AGGTGTACTGATGCTCAACGCTGGT
LOC_Os07g18874
Os.49096.1.S1_at--195--2611Chr07:11180779..11180803 (25 bp)
AACGCTGGTTTCTTCAGACTCCCAA
LOC_Os07g18874
Os.49096.1.S1_at--716--1391Chr07:11180794..11180818 (25 bp)
AGACTCCCAAGTGATCTGCCAAAAC
LOC_Os07g18874
Os.49096.1.S1_at--198--331Chr07:11180838..11180862 (25 bp)
ATACTTCATCTCCTACCACAAGTAT
LOC_Os07g18874
Os.49096.1.S1_at--916--1191Chr07:11180858..11180882 (25 bp)
AGTATGCAACGCAGGGACTGTACAA
LOC_Os07g18874
Os.49096.1.S1_at--770--2731Chr07:11180881..11180905 (25 bp)
AAGAATGAGCTGTTGGGCTTGGTCT
LOC_Os07g18874
Os.49096.1.S1_at--597--4671Chr07:11180924..11180948 (25 bp)
GCGGGCTCACGATTAGTGGCGAATA
LOC_Os07g18874
Os.49096.1.S1_at--673--2811Chr07:11181058..11181082 (25 bp)
AAGATTTCCGAGATTGTGAAGCCAA
LOC_Os07g18874
Os.49096.1.S1_at--867--9071Chr07:11181086..11181110 (25 bp)
TGCTTCACTTTCTCTGTGCTTCAAA
LOC_Os07g18874
Target Sequence 
GCCAGATTTTCTGCTAGGGATAATCACTGGCTCTGGTGTACAAGGTGTACTGATGCTCAACGCTGGTTTCTTCAGACTCC
CAAGTGATCTGCCAAAACCAGTTTGGAANTACCCAACATACTTCATCTCCTACCACAAGTATGCAACGCAGGGACTGTAC
AAGAATGAGCTGTTGGGCTTGGTCTTTGAAGATATTGGCGGTGGCGGGCTCACGATTAGTGGCGAATACATCCTAAANGA
ATTACTTNACAGNGTGNGAATTAAGCTACTCTAANGTGNGTGGATCTTGCGANATTAGTTGCNATGATCATAATTTACAG
NGNTGCTTTTCTNTANGTTATTATAAAGATTTCCGAGATTGTGAAGCCAANGATGCTTCACTTTCTCTGTGCTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis