Browse Element(s) Details


Os.49930.1.S2_x_at

Description gb:AK119391.1
DB_XREF= gi:37989014
TID=Os.49930.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-C10, full insert sequence.
FL= gb:AK102563.1 gb:AK071418.1 gb:AK119391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0938411/11expressed protein
LOC_Os07g188741/11ABC-2 type transporter family protein, expressed
LOC_Os01g619401/11stigma/style ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09340Os.5684.1.S1_at11/117+4912955..4919088Plasma membrane ATPase 1, putative, expressed
LOC_Os07g09350Os.20602.2.S1_x_at11/117+4926055..4928235hAT family dimerisation domain containing protein
LOC_Os07g09360NANA7+4931580..4931912hypothetical protein
LOC_Os07g09370Os.53755.1.S1_at11/117+4934199..4936212expressed protein
LOC_Os07g09384Os.49930.1.S2_x_at11/117+4938854..4942898expressed protein
LOC_Os07g09384Os.49930.1.S1_at11/117+4938854..4942898expressed protein
LOC_Os07g09400Os.18387.1.S1_at11/117+4948128..4961613expressed protein
LOC_Os07g09410OsAffx.10222.1.S1_x_at2/117+4963554..4965589hypothetical protein
LOC_Os07g09420Os.10872.1.S1_at11/117+4967673..4969425ATPase, AAA family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49930.1.S2_x_at--524--4772Chr07:4942423..4942447 (25 bp)
GCTGCTCCGCCTACGTCATGCAGGA
LOC_Os07g09384
Os.49930.1.S2_x_at--897--1891Chr07:4942435..4942459 (25 bp)
ACGTCATGCAGGACGACCGCCTCTT
LOC_Os07g09384
Os.49930.1.S2_x_at--1056--4691Chr07:4942578..4942602 (25 bp)
GCGGCGTCCGGGAACACGTACATCG
LOC_Os07g09384
Os.49930.1.S2_x_at--95--4251Chr07:4942585..4942609 (25 bp)
CCGGGAACACGTACATCGGCGACGA
LOC_Os07g09384
Os.49930.1.S2_x_at--7--8371Chr07:4942656..4942680 (25 bp)
GGCGTGGACATCATCCATGGCCCCG
LOC_Os07g09384
Os.49930.1.S2_x_at--169--4572Chr07:11174578..11174602 (25 bp)
GCGCTGCTGTTCCTCGACGAGCCGA
LOC_Os07g18874
Os.49930.1.S2_x_at--102--7191Chr07:4942711..4942735 (25 bp)
GTCTGGACTCCACGAGCGCGCACAG
LOC_Os07g09384
Os.49930.1.S2_x_at--310--1471Chr07:4942744..4942768 (25 bp)
AGAAGGTGCGCGACATCGCCTGCGC
LOC_Os07g09384
Os.49930.1.S2_x_at--582--1751Chr07:4942831..4942855 (25 bp)
ACCTCGTCATTCTCGCGCGTGGGCA
LOC_Os07g09384
Os.49930.1.S2_x_at--856--9331Chr07:4942843..4942867 (25 bp)
TCGCGCGTGGGCAGCTCATGTACAG
LOC_Os07g09384
Os.49930.1.S2_x_at--351--5071Chr07:4942853..4942877 (25 bp)
GCAGCTCATGTACAGCGGCGCGCCA
LOC_Os07g09384
Target Sequence 
GCTGCTCCGCCTACGTCATGCAGGACGACCGCCTCTTCCCCATGCTCACCGTCCGCGAGACCCTCATGTTCGCCGCCGAC
CTCCGCCTCGGCGCCTCCGTCCCCGCCGCCGACAAGCGCCGCCGCGTCGACGCCCTCATCGACCAGCTCGGCCTCGCGGC
GTCCGGGAACACGTACATCGGCGACGAGGGGACCCGGGGCGTGTCCGGCGGCGAGCGGCGGCGTGTGTCGATCGGCGTGG
ACATCATCCATGGCCCCGCGCTGCTGTTCCTCGACGAGCCGACGTCCGGTCTGGACTCCACGAGCGCGCACAGCGTGGTC
GAGAAGGTGCGCGACATCGCCTGCGCCGGGAGCACCGTCGTGCTCACCATCCACCAGCCGTCGTCGCGCATCCTGCAGCT
GCTCGACCACCTCGTCATTCTCGCGCGTGGGCAGCTCATGTACAGCGGCGCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49930.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis