Browse Element(s) Details


Os.10872.1.S1_at

Description gb:AK065505.1
DB_XREF= gi:32975523
TID=Os.10872.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027N01, full insert sequence.
FL= gb:AK065505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0942011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09384Os.49930.1.S2_x_at11/117+4938854..4942898expressed protein
LOC_Os07g09384Os.49930.1.S1_at11/117+4938854..4942898expressed protein
LOC_Os07g09400Os.18387.1.S1_at11/117+4948128..4961613expressed protein
LOC_Os07g09410OsAffx.10222.1.S1_x_at2/117+4963554..4965589hypothetical protein
LOC_Os07g09420Os.10872.1.S1_at11/117+4967673..4969425ATPase, AAA family protein, expressed
LOC_Os07g09430OsAffx.28361.1.S1_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09430OsAffx.28361.1.S1_x_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09450Os.49080.1.S1_at10/117+4976267..4979956DNAJ protein, putative, expressed
LOC_Os07g09460OsAffx.16174.1.S1_at11/117+4986453..4996726expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10872.1.S1_at--934--1751Chr07:4969172..4969196 (25 bp)
ACCTGCCTCGCCGAGTTGGTCAAGG
LOC_Os07g09420
Os.10872.1.S1_at--150--4291Chr07:4969177..4969201 (25 bp)
CCTCGCCGAGTTGGTCAAGGAGCTC
LOC_Os07g09420
Os.10872.1.S1_at--407--4211Chr07:4969215..4969239 (25 bp)
CCGACAAGGCTCAGGCGAAAGGGAA
LOC_Os07g09420
Os.10872.1.S1_at--9--5771Chr07:4969286..4969310 (25 bp)
GACGAGGAGTAGACTAATGTTGACT
LOC_Os07g09420
Os.10872.1.S1_at--844--5691Chr07:4969307..4969331 (25 bp)
GACTTATTTGATGTTTACTTGGATT
LOC_Os07g09420
Os.10872.1.S1_at--976--10851Chr07:4969325..4969349 (25 bp)
TTGGATTACTTGCTCACTTCGCTTG
LOC_Os07g09420
Os.10872.1.S1_at--280--2071Chr07:4969332..4969356 (25 bp)
ACTTGCTCACTTCGCTTGTGCTAGA
LOC_Os07g09420
Os.10872.1.S1_at--950--3311Chr07:4969339..4969363 (25 bp)
CACTTCGCTTGTGCTAGATTGTCAC
LOC_Os07g09420
Os.10872.1.S1_at--808--4931Chr07:4969345..4969369 (25 bp)
GCTTGTGCTAGATTGTCACAGATAT
LOC_Os07g09420
Os.10872.1.S1_at--1134--2131Chr07:4969362..4969386 (25 bp)
ACAGATATTTGACTATTCTTACATG
LOC_Os07g09420
Os.10872.1.S1_at--514--10751Chr07:4969370..4969394 (25 bp)
TTGACTATTCTTACATGATTAACTA
LOC_Os07g09420
Target Sequence 
ACCTGCCTCGCCGAGTTGGTCAAGGAGCTCGAGAAGGCCAAGGCCGACAAGGCTCAGGCGAAAGGGAAGGCGGCGGCGAC
GGCGGCGGCGGAAGAGGAGGTCGACGGCGATGACGACGAGGAGTAGACTAATGTTGACTTATTTGATGTTTACTTGGATT
ACTTGCTCACTTCGCTTGTGCTAGATTGTCACAGATATTTGACTATTCTTACATGATTAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis