Browse Element(s) Details


Os.49930.1.S1_at

Description gb:AK102563.1
DB_XREF= gi:32987772
TID=Os.49930.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097K02, full insert sequence.
FL= gb:AK102563.1 gb:AK071418.1 gb:AK119391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0938411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09340Os.5684.1.S1_at11/117+4912955..4919088Plasma membrane ATPase 1, putative, expressed
LOC_Os07g09350Os.20602.2.S1_x_at11/117+4926055..4928235hAT family dimerisation domain containing protein
LOC_Os07g09360NANA7+4931580..4931912hypothetical protein
LOC_Os07g09370Os.53755.1.S1_at11/117+4934199..4936212expressed protein
LOC_Os07g09384Os.49930.1.S2_x_at11/117+4938854..4942898expressed protein
LOC_Os07g09384Os.49930.1.S1_at11/117+4938854..4942898expressed protein
LOC_Os07g09400Os.18387.1.S1_at11/117+4948128..4961613expressed protein
LOC_Os07g09410OsAffx.10222.1.S1_x_at2/117+4963554..4965589hypothetical protein
LOC_Os07g09420Os.10872.1.S1_at11/117+4967673..4969425ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49930.1.S1_at--478--3171Chr07:4939787..4939923 (25 bp)
AATTGAGTCCACAGAATCCTTCTCG
LOC_Os07g09384
Os.49930.1.S1_at--94--951Chr07:4940004..4940028 (25 bp)
AGGACACTCATTCACGTTCAACGGG
LOC_Os07g09384
Os.49930.1.S1_at--67--1911Chr07:4940024..4940048 (25 bp)
ACGGGACTAGCCTGGAGGAGCTTTT
LOC_Os07g09384
Os.49930.1.S1_at--965--5751Chr07:4940080..4940104 (25 bp)
GACGTGATTATCTGCTCTCGTAGCC
LOC_Os07g09384
Os.49930.1.S1_at--957--9411Chr07:4940168..4940192 (25 bp)
TCGTGCTCGTGCGTGAGTCATCAAA
LOC_Os07g09384
Os.49930.1.S1_at--1125--1031Chr07:4940819..4940843 (25 bp)
AGGGTGGTGTCAGCGACTCAAATCA
LOC_Os07g09384
Os.49930.1.S1_at--619--151Chr07:4940887..4940911 (25 bp)
ATTATCAGTTCCACTGGCTACCATA
LOC_Os07g09384
Os.49930.1.S1_at--1028--6871Chr07:4940917..4940941 (25 bp)
GTATTATTCTTCCATCTTCAGGAGA
LOC_Os07g09384
Os.49930.1.S1_at--802--8791Chr07:4941002..4941026 (25 bp)
TGATCTCTGGTAGCTAAAGACCCTT
LOC_Os07g09384
Os.49930.1.S1_at--1053--2311Chr07:4941017..4941041 (25 bp)
AAAGACCCTTCAAAATGCCTATCCT
LOC_Os07g09384
Os.49930.1.S1_at--452--10151Chr07:4941036..4941060 (25 bp)
TATCCTGTCATTCCTCAGTTCTATA
LOC_Os07g09384
Target Sequence 
AATTGAGTCCACAGAATCCTTCTCGCTGCCGCTGCACAAGGTGGATGGGCGGGCGATCCACTACCACATTGGGGATGACA
ACGGCGACATCGGCGATGATCAGGAAGGACACTCATTCACGTTCAACGGGACTAGCCTGGAGGAGCTTTTGGAGAGGTTG
CAGGAGGAGACGGGGCTCAACGACGTGATTATCTGCTCTCGTAGCCCGATCAATGGGAAGCTCATGCCCCTCCGCTTGCA
GCTGCCGCCCAACAACGCCGCCATGCATATCGTGCTCGTGCGTGAGTCATCAAAAGTGGCAAAATCATTTCCATGACCAT
GTGGTAAAATTTGAAGAGGGTGGTGTCAGCGACTCAAATCAAGCAAGAACTGTGCATCTGTTGTATATATTGTAATCCCT
GTTTATTATCAGTTCCACTGGCTACCATAATCAAGTATTATTCTTCCATCTTCAGGAGATCTCATTCTTGTAAGTATNTG
CTTCTGTCAACTTTTTTATCATTTATTCAACAGGTAGAGTGATCTCTGGTAGCTAAAGACCCTTCAAAATGCCTATCCTG
TCATTCCTCAGTTCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis