Browse Element(s) Details


Os.53755.1.S1_at

Description gb:AK099718.1
DB_XREF= gi:32984927
TID=Os.53755.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088A21, full insert sequence.
FL= gb:AK099718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0937011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09340Os.5684.1.S1_at11/117+4912955..4919088Plasma membrane ATPase 1, putative, expressed
LOC_Os07g09350Os.20602.2.S1_x_at11/117+4926055..4928235hAT family dimerisation domain containing protein
LOC_Os07g09360NANA7+4931580..4931912hypothetical protein
LOC_Os07g09370Os.53755.1.S1_at11/117+4934199..4936212expressed protein
LOC_Os07g09384Os.49930.1.S2_x_at11/117+4938854..4942898expressed protein
LOC_Os07g09384Os.49930.1.S1_at11/117+4938854..4942898expressed protein
LOC_Os07g09400Os.18387.1.S1_at11/117+4948128..4961613expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53755.1.S1_at--1147--1311Chr07:4935625..4935649 (25 bp)
AGAGGCTCCTTTGGTTGCTAGTATT
LOC_Os07g09370
Os.53755.1.S1_at--1058--8451Chr07:4935693..4935717 (25 bp)
TGGCCATATCGTTTGGTCTGCTCAA
LOC_Os07g09370
Os.53755.1.S1_at--621--8251Chr07:4935730..4935754 (25 bp)
GGCACCTATCCGGATTCTGAAGAAC
LOC_Os07g09370
Os.53755.1.S1_at--1114--8111Chr07:4935769..4935793 (25 bp)
GGACTGTCACACAATCAGCAAGCTC
LOC_Os07g09370
Os.53755.1.S1_at--182--4831Chr07:4935790..4935814 (25 bp)
GCTCATATCGAAGCTCTATGGCGTG
LOC_Os07g09370
Os.53755.1.S1_at--999--1951Chr07:4935882..4935906 (25 bp)
ACTGGTGATCACATCATGAGCCATA
LOC_Os07g09370
Os.53755.1.S1_at--1120--8911Chr07:4935898..4935922 (25 bp)
TGAGCCATAACGTCTGATGCTACCA
LOC_Os07g09370
Os.53755.1.S1_at--380--631Chr07:4935914..4935938 (25 bp)
ATGCTACCAGTAGAGATCCCTTTGG
LOC_Os07g09370
Os.53755.1.S1_at--40--8631Chr07:4935936..4935960 (25 bp)
TGGTGTGTTAGAAGCGCCTCTTGCC
LOC_Os07g09370
Os.53755.1.S1_at--750--4751Chr07:4935991..4936015 (25 bp)
GCTGACTACAGCCTTTCATATTTTT
LOC_Os07g09370
Os.53755.1.S1_at--421--2531Chr07:4936169..4936193 (25 bp)
AACTATGTTCACTTCATCTTGCAGA
LOC_Os07g09370
Target Sequence 
AGAGGCTCCTTTGGTTGCTAGTATTGACAATGCCAAGGGCGCCGCCCTCCGGTTGCACAGCGAGCGTCTGGCCATATCGT
TTGGTCTGCTCAACGCGACGCCTGGGGCACCTATCCGGATTCTGAAGAACCTGAGAGTTTGCAAGGACTGTCACACAATC
AGCAAGCTCATATCGAAGCTCTATGGCGTGGAGATCATCGTGAGGGATCGAATTCGATTCCATCATTTCAAGGATGGGTC
ATGTTCTTGCAAAGATTACTGGTGATCACATCATGAGCCATAACGTCTGATGCTACCAGTAGAGATCCCTTTGGTGTGTT
AGAAGCGCCTCTTGCCTCCAAGCCAAGGTGAAATGGGATGTTCAATGCTGACTACAGCCTTTCATATTTTTTTTCTAGGA
CAGATGAACATTAGCAGATTGATTAGAGAAACAGGACATTGTATAATATATTCAATCTCATTTTCTTCTTGAGCCATCAA
GGTAAATATTCTAATTACTCTGAATCACGACTGTGTCTATATGAACAACTATGTCTATATGAACAACTATGTTCACTTCA
TCTTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis