Browse Element(s) Details


Os.5684.1.S1_at

Description gb:D31843.1
DB_XREF= gi:633109
GEN=OSA2
TID=Os.5684.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5684 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for plasma membrane H+-ATPase, complete cds.
PROD=plasma membrane H+-ATPase
FL= gb:AK072909.1 gb:AK121402.1 gb:D31843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0934011/11Plasma membrane ATPase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09320Os.18245.1.S1_at10/117+4881117..4888386expressed protein
LOC_Os07g09330Os.8849.1.S1_at11/117+4888573..4891968histidinol-phosphate phosphatase, putative, inositol monophosphatase family protein, expressed
LOC_Os07g09340Os.5684.1.S1_at11/117+4912955..4919088Plasma membrane ATPase 1, putative, expressed
LOC_Os07g09350Os.20602.2.S1_x_at11/117+4926055..4928235hAT family dimerisation domain containing protein
LOC_Os07g09360NANA7+4931580..4931912hypothetical protein
LOC_Os07g09370Os.53755.1.S1_at11/117+4934199..4936212expressed protein
LOC_Os07g09384Os.49930.1.S2_x_at11/117+4938854..4942898expressed protein
LOC_Os07g09384Os.49930.1.S1_at11/117+4938854..4942898expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5684.1.S1_at--50--1231Chr07:4918149..4918173 (25 bp)
AGTTCCTGATCCGTTATGCGTTGAG
LOC_Os07g09340
Os.5684.1.S1_at--542--7471Chr07:4918364..4918388 (25 bp)
GTGGGCGACTGCTCAGAGGACCATC
LOC_Os07g09340
Os.5684.1.S1_at--457--5611Chr07:4918433..4918457 (25 bp)
GACAAGCTACAACGATCTCAACCAG
LOC_Os07g09340
Os.5684.1.S1_at--221--2631Chr07:4918452..4918476 (25 bp)
AACCAGCTTGCAGAAGAGGCCCGTA
LOC_Os07g09340
Os.5684.1.S1_at--1099--4511Chr07:4918470..4918494 (25 bp)
GCCCGTAGGAGAGCCGAAATCGCAA
LOC_Os07g09340
Os.5684.1.S1_at--739--6651Chr07:4918609..4918633 (25 bp)
GTTGAGAGAGCTGACCACCCTGAAG
LOC_Os07g09340
Os.5684.1.S1_at--653--7311Chr07:4918754..4918778 (25 bp)
GTGCTAGGCCACAACAATAATTTAC
LOC_Os07g09340
Os.5684.1.S1_at--659--6591Chr07:4918791..4918815 (25 bp)
GATTGAGCGGATTTCCAGTGTCGGT
LOC_Os07g09340
Os.5684.1.S1_at--181--9231Chr07:4918804..4918828 (25 bp)
TCCAGTGTCGGTGCGGTGCTAATCG
LOC_Os07g09340
Os.5684.1.S1_at--32--7331Chr07:4918819..4918843 (25 bp)
GTGCTAATCGCTAGAGTTCATCCCC
LOC_Os07g09340
Os.5684.1.S1_at--484--9551Chr07:4918846..4918870 (25 bp)
TCTATCTTGTGTCCATTAACCACCC
LOC_Os07g09340
Target Sequence 
AGTTCCTGATCCGTTATGCGTTGAGTGGGAGGGCATGGGATCTTGTTCTTGAGCAAAGGATTGCTTTCACANAGGAAGAA
GGATTTCGGCACACAAGAAAACCAGCTCAAGTGGGCGACTGCTCAGAGGACCATCCATGGGCTCCAGCCAGCCGCCACCG
CGGCTGTCTTCCGCGACATGACAAGCTACAACGATCTCAACCAGCTTGCAGAAGAGGCCCGTAGGAGAGCCGAAATCGCA
AGGTTGAGAGAGCTGACCACCCTGAAGGGGCGGATGGAGTCGGTGGTGAAGCAGAAGGGCTTGGATCTTGAGACCATCCA
GCAGTCATACACCGTGTGATTAACAGAGAATCTCCAATATATATATTTATTATATACTATTTATAATGTGCTAGGCCACA
ACAATAATTTACCTGGATGATGATGATTGAGCGGATTTCCAGTGTCGGTGCGGTGCTAATCGCTAGAGTTCATCCCCCAT
CTATCTTGTGTCCATTAACCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis