Browse Element(s) Details


Os.18245.1.S1_at

Description gb:AK073533.1
DB_XREF= gi:32983556
TID=Os.18245.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046D05, full insert sequence.
FL= gb:AK073533.1 gb:AK067037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0932010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09280OsAffx.16171.1.S1_s_at11/117+4861486..4862611expressed protein
LOC_Os07g09280OsAffx.16171.1.S1_at11/117+4861486..4862611expressed protein
LOC_Os07g09290OsAffx.28359.1.S1_at11/117+4863336..4864648hypothetical protein
LOC_Os07g09300OsAffx.31767.1.S1_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.1.S1_x_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_x_at7/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_at4/117+4866657..4878563POT family protein, expressed
LOC_Os07g09310OsAffx.28360.1.S1_at11/117+4878870..4881033Thioredoxin family protein, expressed
LOC_Os07g09320Os.18245.1.S1_at10/117+4881117..4888386expressed protein
LOC_Os07g09330Os.8849.1.S1_at11/117+4888573..4891968histidinol-phosphate phosphatase, putative, inositol monophosphatase family protein, expressed
LOC_Os07g09340Os.5684.1.S1_at11/117+4912955..4919088Plasma membrane ATPase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18245.1.S1_at--1120--5531Chr07:4883925..4883949 (25 bp)
GAAAGGCGAATACAATATCCCGTCA
LOC_Os07g09320
Os.18245.1.S1_at--638--231NONE
ATATCCCGTCAACAGGCAATTATCA
NONE
Os.18245.1.S1_at--1115--7951Chr07:4881814..4881838 (25 bp)
GGATCTTTCCACATAACGAATATAG
LOC_Os07g09320
Os.18245.1.S1_at--242--2691Chr07:4881786..4881810 (25 bp)
AAGCTCCAATCTTCGTCAATAGCAA
LOC_Os07g09320
Os.18245.1.S1_at--964--9211Chr07:4881755..4881779 (25 bp)
TCCATGCAACGAATGCACTCACTTA
LOC_Os07g09320
Os.18245.1.S1_at--95--7391Chr07:4881468..4881492 (25 bp)
GTGAGGCAACATATAGTTCGCAGTA
LOC_Os07g09320
Os.18245.1.S1_at--72--1511Chr07:4881317..4881341 (25 bp)
AGCACCATATCTAATTCGGTCCCAT
LOC_Os07g09320
Os.18245.1.S1_at--890--7791Chr07:4881300..4881324 (25 bp)
GGTCCCATCCTTTGCATGTAAATCG
LOC_Os07g09320
Os.18245.1.S1_at--882--511Chr07:4881279..4881303 (25 bp)
ATCGTTGTATATTTCCATGCTTATC
LOC_Os07g09320
Os.18245.1.S1_at--277--7531Chr07:4881138..4881162 (25 bp)
GTGGACTGGGAACTGAATTCTCAAA
LOC_Os07g09320
Os.18245.1.S1_at--909--9511Chr07:4881120..4881144 (25 bp)
TCTCAAAGATGAACCCCTTGCATGC
LOC_Os07g09320
Target Sequence 
GAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGGATAAAGGTGGATCTTTCCACATAACGAATATAGGA
AAAGCTCCAATCTTCGTCAATAGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGAT
AAGGCACATGAAATTCATTTTTCACATCAATCAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCC
AAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTC
AGTANTATATATCGGCAGGATAGAAGTATATAGCACCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATA
TTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACG
GTTTTATGTTTGAAATTTGGATTTAAATTTCATCGACAAAAGTTGTTTTAGTGGACTGGGAACTGAATTCTCAAAGATGA
ACCCCTTGCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis