Browse Element(s) Details


OsAffx.31767.1.S1_x_at

Description tigr:9635.m00892
TID=OsAffx.31767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0930011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09240NANA7+4838549..4843930retrotransposon protein, putative, unclassified
LOC_Os07g09250OsAffx.16169.1.S1_at11/117+4848566..4849210hypothetical protein
LOC_Os07g09260NANA7+4850081..4850729NA
LOC_Os07g09270OsAffx.16170.1.S1_at11/117+4853959..4855313hypothetical protein
LOC_Os07g09280OsAffx.16171.1.S1_s_at11/117+4861486..4862611expressed protein
LOC_Os07g09280OsAffx.16171.1.S1_at11/117+4861486..4862611expressed protein
LOC_Os07g09290OsAffx.28359.1.S1_at11/117+4863336..4864648hypothetical protein
LOC_Os07g09300OsAffx.31767.1.S1_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.1.S1_x_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_x_at7/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_at4/117+4866657..4878563POT family protein, expressed
LOC_Os07g09310OsAffx.28360.1.S1_at11/117+4878870..4881033Thioredoxin family protein, expressed
LOC_Os07g09320Os.18245.1.S1_at10/117+4881117..4888386expressed protein
LOC_Os07g09330Os.8849.1.S1_at11/117+4888573..4891968histidinol-phosphate phosphatase, putative, inositol monophosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31767.1.S1_x_at--1100--2811Chr07:4867427..4867451 (25 bp)
AAGTTGTGCGACGAACAGCTGCCGA
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--970--5551Chr07:4867392..4867416 (25 bp)
GAAAGCTCAGCCAATCAGCTCTTAC
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--243--9531Chr07:4867348..4867372 (25 bp)
TCTCATTGGCCGTAGGTTTGTTTTC
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--391--8911Chr07:4867309..4867333 (25 bp)
TGAGCAGACCTTTCGGACTGGACAA
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--973--2971Chr07:4867230..4867254 (25 bp)
AATGGTGTTCATGCCACTCTTGGAA
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--107--291Chr07:4867205..4867229 (25 bp)
ATAGTCTTAGCCATGCAACCTTAGC
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--603--1411Chr07:4867160..4867184 (25 bp)
AGAAATGTGATCCTACCCCTTTAAT
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--402--2351Chr07:4867110..4867134 (25 bp)
AAAGCATCCACCTTGCAGACATATG
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--668--271Chr07:4867090..4867114 (25 bp)
ATATGGTGTAACTGAACTCCCAACA
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--694--10431Chr07:4866829..4866853 (25 bp)
TTATGCCGTAGAACTCCGGTTGGGA
LOC_Os07g09300
OsAffx.31767.1.S1_x_at--199--6431Chr07:4866801..4866825 (25 bp)
GATCTAGGTCTACTCGCAAGGAACT
LOC_Os07g09300
Target Sequence 
AAGTTGTGCGACGAACAGCTGCCGATCTAGTTGAAGAAAGCTCAGCCAATCAGCTCTTACTGCCGTCACCCCTCCGTGCT
CTCATTGGCCGTAGGTTTGTTTTCCAAATAGTTATAAGTGAGCAGACCTTTCGGACTGGACAATTGTGCTTTCAAGTAAG
GAAAGTGTTTAATCCACCCCCAATCGATGGGCAAAACAATGGTGTTCATGCCACTCTTGGAAATAGTCTTAGCCATGCAA
CCTTAGCTAGAACGTCAGGTGCTCAAAAGAAATGTGATCCTACCCCTTTAATGGAGGCATCGGGGAGTAGCTCCAACAAA
GCATCCACCTTGCAGACATATGGTGTAACTGAACTCCCAACAGATCCTAAAGGAAGCGCCACTCCACCACCTCCTTTTGC
TCATGGGGCTATCACAAAAACATCACCACAGAAGGGGAATGAGATTTCTGAAGAACATGGATATTTATGCCGTAGAACTC
CGGTTGGGAAACGATCTAGGTCTACTCGCAAGGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31767.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis