Browse Element(s) Details


OsAffx.16169.1.S1_at

Description tigr:9635.m00887
TID=OsAffx.16169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0925011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09200OsAffx.28358.1.S1_at11/117+4827210..4827892hypothetical protein
LOC_Os07g09210OsAffx.16167.1.S1_at11/117+4828650..4829408hypothetical protein
LOC_Os07g09220OsAffx.16168.1.S1_at11/117+4832264..4832932adenylate isopentenyltransferase 8, putative
LOC_Os07g09230Os.28943.1.S1_x_at1/117+4834922..4838164retrotransposon protein, putative, unclassified
LOC_Os07g09240NANA7+4838549..4843930retrotransposon protein, putative, unclassified
LOC_Os07g09250OsAffx.16169.1.S1_at11/117+4848566..4849210hypothetical protein
LOC_Os07g09260NANA7+4850081..4850729NA
LOC_Os07g09270OsAffx.16170.1.S1_at11/117+4853959..4855313hypothetical protein
LOC_Os07g09280OsAffx.16171.1.S1_s_at11/117+4861486..4862611expressed protein
LOC_Os07g09280OsAffx.16171.1.S1_at11/117+4861486..4862611expressed protein
LOC_Os07g09290OsAffx.28359.1.S1_at11/117+4863336..4864648hypothetical protein
LOC_Os07g09300OsAffx.31767.1.S1_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.1.S1_x_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_x_at7/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_at4/117+4866657..4878563POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16169.1.S1_at--174--3731Chr07:4849111..4849135 (25 bp)
CTACTCCAGCAACTAGGCTTCTTTA
LOC_Os07g09250
OsAffx.16169.1.S1_at--107--2931Chr07:4849087..4849111 (25 bp)
AAGGAGCCAGTCTACCGAGGCGAAC
LOC_Os07g09250
OsAffx.16169.1.S1_at--41--1471Chr07:4848995..4849019 (25 bp)
AGAAGTGATCGCTTTTCAAACCCGC
LOC_Os07g09250
OsAffx.16169.1.S1_at--1062--4611Chr07:4848897..4848921 (25 bp)
GCGTTCCCTTGGGTGTAGCCAACAA
LOC_Os07g09250
OsAffx.16169.1.S1_at--983--5291Chr07:4848847..4848871 (25 bp)
GAAGGCGATAACTGGTGCCACCTCC
LOC_Os07g09250
OsAffx.16169.1.S1_at--580--851Chr07:4848812..4848836 (25 bp)
ATGGCCCGAAGGAAGCAGGTTCACC
LOC_Os07g09250
OsAffx.16169.1.S1_at--499--4851Chr07:4848776..4848800 (25 bp)
GCTAGCCTGCACCACTGAGAATGTA
LOC_Os07g09250
OsAffx.16169.1.S1_at--890--10111Chr07:4848709..4848733 (25 bp)
TATGCAGATCTGGAAGCCCGCTATC
LOC_Os07g09250
OsAffx.16169.1.S1_at--53--2191Chr07:4848666..4848690 (25 bp)
ACACTACTACGTTGCTCCTGGAGGC
LOC_Os07g09250
OsAffx.16169.1.S1_at--558--951Chr07:4848637..4848661 (25 bp)
AGGAGAGCTCGTCGCATGAAGTACA
LOC_Os07g09250
OsAffx.16169.1.S1_at--572--1471Chr07:4848609..4848633 (25 bp)
AGAAGGCTAGGCTCCTCAGGAAGCT
LOC_Os07g09250
Target Sequence 
CTACTCCAGCAACTAGGCTTCTTTAAGGAGCCAGTCTACCGAGGCGAACAAGTTGTCCAGGGATTTCAGAAGAGCTGGAA
GGTGATAATCTTCTTCCACTTTCAAGGAGATGGAGAAGAAGTGATCGCTTTTCAAACCCGCCATCCTCGTACCACTCTTG
AATCCGCCATCCAGGATGTGTTCCGTGAAGCCCTCCTGCGGTTTTGTGGGGTTTGCGTTCCCTTGGGTGTAGCCAACAAT
TTTGGCCTACACCCATACCGCAAAGAAGGCGATAACTGGTGCCACCTCCATCCTACTGAATGGCCCGAAGGAAGCAGGTT
CACCCTCCTCTCTGAGCTAGCCTGCACCACTGAGAATGTATATGAGCAGGTCCTCAAAGAGCTGGATGAACTCCGGGATA
GATATGCAGATCTGGAAGCCCGCTATCAACACCTAACTCTGGCGCACACTACTACGTTGCTCCTGGAGGCGTCCAGGAGA
GCTCGTCGCATGAAGTACAAGAAGAAGGCTAGGCTCCTCAGGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis