Browse Element(s) Details


OsAffx.28359.1.S1_at

Description tigr:9635.m00891
TID=OsAffx.28359.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0929011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09240NANA7+4838549..4843930retrotransposon protein, putative, unclassified
LOC_Os07g09250OsAffx.16169.1.S1_at11/117+4848566..4849210hypothetical protein
LOC_Os07g09260NANA7+4850081..4850729NA
LOC_Os07g09270OsAffx.16170.1.S1_at11/117+4853959..4855313hypothetical protein
LOC_Os07g09280OsAffx.16171.1.S1_s_at11/117+4861486..4862611expressed protein
LOC_Os07g09280OsAffx.16171.1.S1_at11/117+4861486..4862611expressed protein
LOC_Os07g09290OsAffx.28359.1.S1_at11/117+4863336..4864648hypothetical protein
LOC_Os07g09300OsAffx.31767.1.S1_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.1.S1_x_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_x_at7/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_at4/117+4866657..4878563POT family protein, expressed
LOC_Os07g09310OsAffx.28360.1.S1_at11/117+4878870..4881033Thioredoxin family protein, expressed
LOC_Os07g09320Os.18245.1.S1_at10/117+4881117..4888386expressed protein
LOC_Os07g09330Os.8849.1.S1_at11/117+4888573..4891968histidinol-phosphate phosphatase, putative, inositol monophosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28359.1.S1_at--783--851Chr07:4864592..4864616 (25 bp)
ATGGCAGTCCGTCAGGGTCTGCTTC
LOC_Os07g09290
OsAffx.28359.1.S1_at--48--4271Chr07:4864537..4864561 (25 bp)
CCTACTTCGACGCTGAAACCTAATG
LOC_Os07g09290
OsAffx.28359.1.S1_at--889--2631Chr07:4864521..4864545 (25 bp)
AACCTAATGGTCGATGTGCTGGGAT
LOC_Os07g09290
OsAffx.28359.1.S1_at--603--6331Chr07:4864492..4864516 (25 bp)
GATGCTTCGAGGTTTGTCCTAGGTC
LOC_Os07g09290
OsAffx.28359.1.S1_at--996--8111Chr07:4863931..4864442 (25 bp)
GGACGGCAGACAACCTAGAGCTAAG
LOC_Os07g09290
OsAffx.28359.1.S1_at--766--3531Chr07:4863911..4863935 (25 bp)
CTAAGGACTTCAAGGACTCCGGCAA
LOC_Os07g09290
OsAffx.28359.1.S1_at--58--3471Chr07:4863672..4863696 (25 bp)
CAGGGAGACTTGTGTTGAACCATGA
LOC_Os07g09290
OsAffx.28359.1.S1_at--584--831Chr07:4863635..4863659 (25 bp)
ATGGATGGGTCCTGTTGTGCCTGAT
LOC_Os07g09290
OsAffx.28359.1.S1_at--118--7691Chr07:4863587..4863611 (25 bp)
GGTGTACCTAGGAGTTTTGCAGGCT
LOC_Os07g09290
OsAffx.28359.1.S1_at--436--3491Chr07:4863568..4863592 (25 bp)
CAGGCTCTGTTGTTGCTATTGATAT
LOC_Os07g09290
OsAffx.28359.1.S1_at--584--1071Chr07:4863386..4863410 (25 bp)
AGGGCTGCTCCCACGGGTTACATTG
LOC_Os07g09290
Target Sequence 
ATGGCAGTCCGTCAGGGTCTGCTTCGCTCATCGCTTCCCAACGCTCACCACAAGCCCTACTTCGACGCTGAAACCTAATG
GTCGATGTGCTGGGATTGGAGATGCTTCGAGGTTTGTCCTAGGTCGCCGTCGCAAACTCCCCTTGCAGCCATTGTCTGGC
TTCCTTCGCGCCGAGGACGGCAGACAACCTAGAGCTAAGGACTTCAAGGACTCCGGCAAATCCAAACAAGAGACAGAATG
GGCATGCAAGTTTTTCATGTGGGAAACTCAGTATGAGCAGTTGTTGAAGGATATGCAAGCTGGTAATCGTCAAGCAGGGA
GACTTGTGTTGAACCATGATGGGGGGAAGCCATGGATGGGTCCTGTTGTGCCTGATTTTAGGGTTGGAGAAAGAGTTTTG
GTGTACCTAGGAGTTTTGCAGGCTCTGTTGTTGCTATTGATATTGGTGGTGGTCATTATGAGGAGGAGGGCTGCTCCCAC
GGGTTACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis