Browse Element(s) Details


OsAffx.31767.2.S1_at

Description tigr:9640.m01626
TID=OsAffx.31767.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1662011/11hypothetical protein
LOC_Os07g093004/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16570OsAffx.7614.1.S1_at11/1112+9484135..9484526hypothetical protein
LOC_Os12g16580NANA12+9486006..9487648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16590Os.52242.1.S1_at1/1112+9490817..9494174transposon protein, putative, Mariner sub-class
LOC_Os12g16600OsAffx.31660.1.S1_at9/1112+9494762..9496571hypothetical protein
LOC_Os12g16600OsAffx.31660.2.S1_x_at3/1112+9494762..9496571hypothetical protein
LOC_Os12g16610OsAffx.19706.1.S1_at11/1112+9501364..9502022hypothetical protein
LOC_Os12g16620OsAffx.31767.2.S1_x_at11/1112+9508600..9511546hypothetical protein
LOC_Os12g16620OsAffx.31767.2.S1_at11/1112+9508600..9511546hypothetical protein
LOC_Os12g16630NANA12+9516760..9520084hypothetical protein
LOC_Os12g16640OsAffx.19707.1.S1_at10/1112+9526443..9527439hypothetical protein
LOC_Os12g16650Os.52760.1.S1_at11/1112+9529283..9538202cyclopropane fatty acid synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31767.2.S1_at--644--7691Chr12:9510770..9510794 (25 bp)
GGGTCATGTGGGTTCGAAAGAGGGA
LOC_Os12g16620
OsAffx.31767.2.S1_at--85--231Chr12:9510890..9510914 (25 bp)
ATATTGTTGACGCTTTTGCATCAAT
LOC_Os12g16620
OsAffx.31767.2.S1_at--581--8811Chr12:9510894..9510918 (25 bp)
TGTTGACGCTTTTGCATCAATAGAG
LOC_Os12g16620
OsAffx.31767.2.S1_at--736--5791Chr12:9510898..9510922 (25 bp)
GACGCTTTTGCATCAATAGAGGAAA
LOC_Os12g16620
OsAffx.31767.2.S1_at--448--9751Chr12:9511454..9511476 (23 bp)
TAATATTATTTACTCCAGTCAAGGA
LOC_Os12g16620
OsAffx.31767.2.S1_at--56--10211Chr12:9511458..9511482 (25 bp)
TATTTACTCCAGTCAAGGAAGAGAA
LOC_Os12g16620
OsAffx.31767.2.S1_at--764--5512Chr12:9511480..9511504 (25 bp)
GAAAATATTTGCACTCACCATGCTG
LOC_Os12g16620
OsAffx.31767.2.S1_at--732--231Chr12:9511484..9511508 (25 bp)
ATATTTGCACTCACCATGCTGTACT
LOC_Os12g16620
OsAffx.31767.2.S1_at--377--212Chr12:9511486..9511510 (25 bp)
ATTTGCACTCACCATGCTGTACTAT
LOC_Os12g16620
OsAffx.31767.2.S1_at--531--9032Chr12:9511489..9511513 (25 bp)
TGCACTCACCATGCTGTACTATGCA
LOC_Os12g16620
OsAffx.31767.2.S1_at--169--3332Chr12:9511491..9511515 (25 bp)
CACTCACCATGCTGTACTATGCACA
LOC_Os12g16620
Target Sequence 
GGGTCATGTGGGTTCGAAAGAGGGACGGGGTTACAATGCTTGAATATTATGGTTTCCGGTTGCAGCAGCGTAGATGTGAG
GCAATAACATTGATTAGTGGTGGCCGGCTGTTCCAGCAATATATTGTTGACGCTTTTGCATCAATAGAGGAAAATAGAGT
TAGGTTTGTCATTAGAAACAACAAGAATTTAAGGTCAGAGATTTACAAGGGGATCCAAGATGCCTTGCACAAGGGTGATG
TTGATGGAAACTATGTTGGTAAGAAAGTTATTTTGCCTGCTAGCTTTACAGGAAGTAAAAGATATATGATACAAAATTAT
CAAGATGCAATGGCAATTTGTAGGTTTTATGGGCCACCAGACCTTTTCATTACTTTTACTTATAATCTAAAGTGGCAGGA
AATAGCTGATGCTCTTGCATTTATTCCAGGGCAAAAACCAGAAGATAGACCTGATATAATATTATTTACTCCAGTCAAGG
AAGAGAAAATATTTGCACTCACCATGCTGTACTATGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31767.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis