Browse Element(s) Details


OsAffx.31660.1.S1_at

Description tigr:9640.m01624
TID=OsAffx.31660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g166009/11hypothetical protein
LOC_Os12g093605/11expressed protein
LOC_Os12g122505/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16530OsAffx.19704.1.S1_at11/1112+9471444..9471847hypothetical protein
LOC_Os12g16540Os.52308.1.S1_at11/1112+9473783..9476226wall-associated kinase-like 1, putative, expressed
LOC_Os12g16550OsAffx.7613.1.S1_at11/1112+9477854..9478101hypothetical protein
LOC_Os12g16559Os.37711.3.S1_x_at1/1112+9480158..9480942NA
LOC_Os12g16570OsAffx.7614.1.S1_at11/1112+9484135..9484526hypothetical protein
LOC_Os12g16580NANA12+9486006..9487648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16590Os.52242.1.S1_at1/1112+9490817..9494174transposon protein, putative, Mariner sub-class
LOC_Os12g16600OsAffx.31660.1.S1_at9/1112+9494762..9496571hypothetical protein
LOC_Os12g16600OsAffx.31660.2.S1_x_at3/1112+9494762..9496571hypothetical protein
LOC_Os12g16610OsAffx.19706.1.S1_at11/1112+9501364..9502022hypothetical protein
LOC_Os12g16620OsAffx.31767.2.S1_x_at11/1112+9508600..9511546hypothetical protein
LOC_Os12g16620OsAffx.31767.2.S1_at11/1112+9508600..9511546hypothetical protein
LOC_Os12g16630NANA12+9516760..9520084hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31660.1.S1_at--870--371Chr12:9495975..9495999 (25 bp)
ATCAACAACTAGGATCTTAGGGTCT
LOC_Os12g16600
OsAffx.31660.1.S1_at--192--11Chr12:9495972..9495996 (25 bp)
AACAACTAGGATCTTAGGGTCTTTG
LOC_Os12g16600
OsAffx.31660.1.S1_at--471--2031Chr12:9495968..9495992 (25 bp)
ACTAGGATCTTAGGGTCTTTGGCGG
LOC_Os12g16600
OsAffx.31660.1.S1_at--468--9551NONE
TCTTTGGCGGCGAAGGTGTGTGTGT
NONE
OsAffx.31660.1.S1_at--864--4571Chr12:9495610..9495632 (23 bp)
GCGAAGGTGTGTGTGTTAATAGACT
LOC_Os12g16600
OsAffx.31660.1.S1_at--1036--7413Chr12:9495598..9495622 (25 bp)
GTGTTAATAGACTGGTTGCTGCTTT
LOC_Os12g16600
OsAffx.31660.1.S1_at--533--3094Chr12:9495593..9495617 (25 bp)
AATAGACTGGTTGCTGCTTTATGGC
LOC_Os12g16600
OsAffx.31660.1.S1_at--586--10033Chr12:9495591..9495615 (25 bp)
TAGACTGGTTGCTGCTTTATGGCAC
LOC_Os12g16600
OsAffx.31660.1.S1_at--726--5734Chr12:9495589..9495613 (25 bp)
GACTGGTTGCTGCTTTATGGCACAA
LOC_Os12g16600
OsAffx.31660.1.S1_at--978--8574Chr12:9495586..9495610 (25 bp)
TGGTTGCTGCTTTATGGCACAAAAG
LOC_Os12g16600
OsAffx.31660.1.S1_at--32--2911NONE
AAGGATATACAGACAATGTTGGTTG
NONE
Target Sequence 
ATCAACAACTAGGATCTTAGGGTCTTTGGCGGCGAAGGTGTGTGTGTTAATAGACTGGTTGCTGCTTTATGGCACAAAAG
AAAAGGATATACAGACAATGTTGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis