Browse Element(s) Details


OsAffx.19707.1.S1_at

Description tigr:9640.m01628
TID=OsAffx.19707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1664010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16610OsAffx.19706.1.S1_at11/1112+9501364..9502022hypothetical protein
LOC_Os12g16620OsAffx.31767.2.S1_x_at11/1112+9508600..9511546hypothetical protein
LOC_Os12g16620OsAffx.31767.2.S1_at11/1112+9508600..9511546hypothetical protein
LOC_Os12g16630NANA12+9516760..9520084hypothetical protein
LOC_Os12g16640OsAffx.19707.1.S1_at10/1112+9526443..9527439hypothetical protein
LOC_Os12g16650Os.52760.1.S1_at11/1112+9529283..9538202cyclopropane fatty acid synthase, putative, expressed
LOC_Os12g16660NANA12+9540791..9541038hypothetical protein
LOC_Os12g16670Os.52225.1.S1_at11/1112+9544312..9545898expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19707.1.S1_at--1018--5811Chr12:9526529..9526553 (25 bp)
GACCGTGTACGAGAAAGAGGACAGC
LOC_Os12g16640
OsAffx.19707.1.S1_at--515--2791Chr12:9526543..9526567 (25 bp)
AAGAGGACAGCCTTGGCGGTAGTTT
LOC_Os12g16640
OsAffx.19707.1.S1_at--73--4331Chr12:9526553..9526577 (25 bp)
CCTTGGCGGTAGTTTTGCGCGGACA
LOC_Os12g16640
OsAffx.19707.1.S1_at--473--10391Chr12:9526565..9526589 (25 bp)
TTTTGCGCGGACAGTCGGCGTCGAT
LOC_Os12g16640
OsAffx.19707.1.S1_at--997--591NONE
ATGCCCTTCAACTCGCAGTGGCGGA
NONE
OsAffx.19707.1.S1_at--208--791Chr12:9527250..9527274 (25 bp)
ATGGGACGACGGATTTACTAGTGCT
LOC_Os12g16640
OsAffx.19707.1.S1_at--783--7931Chr12:9527260..9527284 (25 bp)
GGATTTACTAGTGCTGGCCTCAGGG
LOC_Os12g16640
OsAffx.19707.1.S1_at--458--6371Chr12:9527291..9527315 (25 bp)
GATCCATCGGCGTTGGCCTCAGGGA
LOC_Os12g16640
OsAffx.19707.1.S1_at--710--10851Chr12:9527303..9527327 (25 bp)
TTGGCCTCAGGGATAGCGGATACAC
LOC_Os12g16640
OsAffx.19707.1.S1_at--679--6471Chr12:9527314..9527338 (25 bp)
GATAGCGGATACACCGACTCCTACT
LOC_Os12g16640
OsAffx.19707.1.S1_at--668--3151Chr12:9527363..9527387 (25 bp)
CACATTACACCGCAACACCAAAAAA
LOC_Os12g16640
Target Sequence 
GACCGTGTACGAGAAAGAGGACAGCCTTGGCGGTAGTTTTGCGCGGACAGTCGGCGTCGATGGTGGCGCCGGCGGCGAAG
TCGTCCATCTCCACCTCGGCTTCATGCCCTTCAACTCGCAGTGGCGGAGAAGATGGGACGACGGATTTACTAGTGCTGGC
CTCAGGGGCAACGGATCCATCGGCGTTGGCCTCAGGGATAGCGGATACACCGACTCCTACTCCTTCGACGCGGATCCCTC
ACCCTCACATTACACCGCAACACCAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis