Browse Element(s) Details


Os.52760.1.S1_at

Description gb:AK069115.1
DB_XREF= gi:32979139
TID=Os.52760.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008H02, full insert sequence.
FL= gb:AK069115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1665011/11cyclopropane fatty acid synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16620OsAffx.31767.2.S1_x_at11/1112+9508600..9511546hypothetical protein
LOC_Os12g16620OsAffx.31767.2.S1_at11/1112+9508600..9511546hypothetical protein
LOC_Os12g16630NANA12+9516760..9520084hypothetical protein
LOC_Os12g16640OsAffx.19707.1.S1_at10/1112+9526443..9527439hypothetical protein
LOC_Os12g16650Os.52760.1.S1_at11/1112+9529283..9538202cyclopropane fatty acid synthase, putative, expressed
LOC_Os12g16660NANA12+9540791..9541038hypothetical protein
LOC_Os12g16670Os.52225.1.S1_at11/1112+9544312..9545898expressed protein
LOC_Os12g16680OsAffx.7615.1.S1_at9/1112+9553050..9555372expressed protein
LOC_Os12g16680Os.56358.1.S1_at4/1112+9553050..9555372expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008610biological_processlipid biosynthesis
GO:0008825molecular_functioncyclopropane-fatty-acyl-phospholipid synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52760.1.S1_at--1050--4711Chr12:9536942..9536966 (25 bp)
GCTGTGAGTCCCTTTTGGCTGAAAA
LOC_Os12g16650
Os.52760.1.S1_at--184--8291Chr12:9536968..9537073 (25 bp)
GGCATATTTGTCACCCAGTTTATCT
LOC_Os12g16650
Os.52760.1.S1_at--1155--10571Chr12:9537156..9537180 (25 bp)
TTCTCTGACTCGGATAACATCTGCC
LOC_Os12g16650
Os.52760.1.S1_at--527--2091Chr12:9537172..9537196 (25 bp)
ACATCTGCCATGTCTGCTGCATCAA
LOC_Os12g16650
Os.52760.1.S1_at--900--9131Chr12:9537858..9537882 (25 bp)
TGCGCAGCCGGTTTTAAATCCAGGA
LOC_Os12g16650
Os.52760.1.S1_at--360--1251Chr12:9537975..9537999 (25 bp)
AGATTGTATTCTCTCGTCCTGGGAA
LOC_Os12g16650
Os.52760.1.S1_at--772--7651Chr12:9538009..9538033 (25 bp)
GGGATCTGGCTTCTAAACTCAAAAT
LOC_Os12g16650
Os.52760.1.S1_at--764--2531Chr12:9538024..9538048 (25 bp)
AACTCAAAATTGACCTCTGCCCTAG
LOC_Os12g16650
Os.52760.1.S1_at--136--1511Chr12:9538049..9538073 (25 bp)
AGCACGAGCCAACCTATTTATCTTT
LOC_Os12g16650
Os.52760.1.S1_at--942--8151Chr12:9538095..9538119 (25 bp)
GGAAACTTTGGTCTTCATGCTTGAA
LOC_Os12g16650
Os.52760.1.S1_at--1104--5571Chr12:9538156..9538180 (25 bp)
GAAATCCTTCAACTATTGGCGACTC
LOC_Os12g16650
Target Sequence 
GCTGTGAGTCCCTTTTGGCTGAAAATGGCATATTTGTCACCCAGTTTATCTCAATTCCGGAGGAACGGTATGATGAGTAC
CGGAGAAGCTCAGACTTTATTAAAGAATACATATTCCCTGGTGGATGCCTTCCTTCTCTGACTCGGATAACATCTGCCAT
GTCTGCTGCATCAAGGCTCTGCATTGAGCACGTTGAGAATATTGGGTACCATTATTATACAACTCTGATACGCTGGAGGG
ACAACTTCATGGCCAATAAAGATAAAATTTTGGCCCTGGGCTTTGATGAGAAGTTCATTCGTACATGGGAGTACTATTTC
ATATACTGCGCAGCCGGTTTTAAATCCAGGACACTTGGAGACTACCAGATTGTATTCTCTCGTCCTGGGAACACCAAGAT
GGGATCTGGCTTCTAAACTCAAAATTGACCTCTGCCCTAGAGCACGAGCCAACCTATTTATCTTTGCCATTGTGTAATAA
TTTACAGGAAACTTTGGTCTTCATGCTTGAAGATCATGTTTGAAAAAAATGAATAAGTCTATATTTGAAATCCTTCAACT
ATTGGCGACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis