Browse Element(s) Details


OsAffx.7615.1.S1_at

Description tigr:9640.m01632
TID=OsAffx.7615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g166809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16650Os.52760.1.S1_at11/1112+9529283..9538202cyclopropane fatty acid synthase, putative, expressed
LOC_Os12g16660NANA12+9540791..9541038hypothetical protein
LOC_Os12g16670Os.52225.1.S1_at11/1112+9544312..9545898expressed protein
LOC_Os12g16680OsAffx.7615.1.S1_at9/1112+9553050..9555372expressed protein
LOC_Os12g16680Os.56358.1.S1_at4/1112+9553050..9555372expressed protein
LOC_Os12g16690Os.49355.1.S1_at11/1112+9563341..9568395Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g16710OsAffx.442.1.S1_x_at3/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.442.1.S1_at2/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.30226.2.S1_x_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710Os.54883.1.S1_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.30226.4.S1_x_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710Os.25330.2.S1_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.24587.1.S1_x_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16720Os.25621.2.S1_at11/1112+9577182..9579181Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7615.1.S1_at--19--8991Chr12:9553093..9553117 (25 bp)
TGAACGGTCGCAGATCATCTCCAAC
LOC_Os12g16680
OsAffx.7615.1.S1_at--727--2552Chr12:9553115..9553139 (25 bp)
AACTGCCTCTCCGATTGATGAAGCC
LOC_Os12g16680
OsAffx.7615.1.S1_at--1033--6311Chr12:9553131..9553155 (25 bp)
GATGAAGCCGCACCCTCTGATTGGT
LOC_Os12g16680
OsAffx.7615.1.S1_at--648--5091Chr12:9553140..9553350 (25 bp)
GCACCCTCTGATTGGTTCAAAGGCA
LOC_Os12g16680
OsAffx.7615.1.S1_at--667--6791NONE
GTTTTTCAGCACAAAAGGGAGGTCA
NONE
OsAffx.7615.1.S1_at--251--8031Chr12:9553950..9553974 (25 bp)
GGAGGTCAGGATCTTCAATCTCTCT
LOC_Os12g16680
OsAffx.7615.1.S1_at--859--431Chr12:9553960..9553983 (24 bp)
ATCTTCAATCTCTCTGGTTTCAGGA
LOC_Os12g16680
OsAffx.7615.1.S1_at--452--3451Chr12:9554082..9554106 (25 bp)
CAGTTTGGCAATCTGTTCTTCACAT
LOC_Os12g16680
OsAffx.7615.1.S1_at--1011--10511Chr12:9554100..9554123 (24 bp)
TTCACATCTGGTACATCGGCAGGTG
LOC_Os12g16680
OsAffx.7615.1.S1_at--426--8591Chr12:9554108..9554316 (25 bp)
TGGTACATCGGCAGGTGCGACAGCA
LOC_Os12g16680
OsAffx.7615.1.S1_at--306--5651NONE
GACAGCAGGGCAGGACATATTTCTT
NONE
Target Sequence 
TGAACGGTCGCAGATCATCTCCAACTGCCTCTCCGATTGATGAAGCCGCACCCTCTGATTGGTTCAAAGGCACAGAGAAT
CCACCATTACAAGAACATTACAAGGGGGTTTGTTTTTCAGCACAAAAGGGAGGTCAGGATCTTCAATCTCTCTGGTTTCA
GGAATATTATGGATTCAGTTTGGCAATCTGTTCTTCACATCTGGTACATCGGCAGGTGCGACAGCAGGGCAGGACATATT
TCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis