Browse Element(s) Details


Os.49355.1.S1_at

Description gb:AK072042.1
DB_XREF= gi:32982065
TID=Os.49355.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104I23, full insert sequence.
FL= gb:AK072042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1669011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16660NANA12+9540791..9541038hypothetical protein
LOC_Os12g16670Os.52225.1.S1_at11/1112+9544312..9545898expressed protein
LOC_Os12g16680OsAffx.7615.1.S1_at9/1112+9553050..9555372expressed protein
LOC_Os12g16680Os.56358.1.S1_at4/1112+9553050..9555372expressed protein
LOC_Os12g16690Os.49355.1.S1_at11/1112+9563341..9568395Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g16710OsAffx.442.1.S1_x_at3/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.442.1.S1_at2/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.30226.2.S1_x_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710Os.54883.1.S1_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.30226.4.S1_x_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710Os.25330.2.S1_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.24587.1.S1_x_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16720Os.25621.2.S1_at11/1112+9577182..9579181Cytochrome P450 family protein, expressed
LOC_Os12g16730NANA12+9586723..9587697retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16740NANA12+9588426..9590054retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49355.1.S1_at--1107--2111Chr12:9567807..9567831 (25 bp)
ACAGGAGCTTCACAACAACAGGCAG
LOC_Os12g16690
Os.49355.1.S1_at--239--2751Chr12:9567835..9567859 (25 bp)
AAGAAGCACCTTCGTCGCACAGGAG
LOC_Os12g16690
Os.49355.1.S1_at--758--7151Chr12:9567926..9567950 (25 bp)
GTCTCAGTGAGATCACACCAGTCTG
LOC_Os12g16690
Os.49355.1.S1_at--1111--2151Chr12:9567940..9567964 (25 bp)
ACACCAGTCTGATGACGCGGCATTG
LOC_Os12g16690
Os.49355.1.S1_at--172--3951Chr12:9567957..9567981 (25 bp)
CGGCATTGGCGTACAGGCTGCAGCA
LOC_Os12g16690
Os.49355.1.S1_at--1159--971Chr12:9567981..9568005 (25 bp)
AGGAGGAGTTCATGACGGCTTTCGA
LOC_Os12g16690
Os.49355.1.S1_at--228--5251Chr12:9568066..9568090 (25 bp)
GAATCTGAGAGCTATGGCCTCCCGG
LOC_Os12g16690
Os.49355.1.S1_at--465--3071Chr12:9568148..9568172 (25 bp)
AATCTTTTCTGCTTACTAATTGCTG
LOC_Os12g16690
Os.49355.1.S1_at--319--3171Chr12:9568165..9568189 (25 bp)
AATTGCTGATTCTTCCTCATAGTCA
LOC_Os12g16690
Os.49355.1.S1_at--1159--2251Chr12:9568243..9568267 (25 bp)
AAATAATGGTTCTTCGCTGTGTCAA
LOC_Os12g16690
Os.49355.1.S1_at--87--111Chr12:9568277..9568301 (25 bp)
ATTCGTTGGCACTCACAAGGTTCAG
LOC_Os12g16690
Target Sequence 
ACAGGAGCTTCACAACAACAGGCAGCAGAAGAAGCACCTTCGTCGCACAGGAGGGCAGCAGCACAGCAACAGGGAGAGGC
TTTGTCCGGGCTTCGCAGCTGGTCCCTAGTGCCAGGGNCGTCTCAGTGAGATCACACCAGTCTGATGACGCGGCATTGGC
GTACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCGAGAGCGAGGGCGAGAGGCAGCCACCTCGGAGCAGCAGCAGCA
CGGTGTCCGCTGCTCGAGCGAATCTGAGAGCTATGGCCTCCCGGGCCATTCGNCTCCGAGCTCGNGGCTGGCCTGTCTAG
NTTTGGTTGCCTGTTTGNTCTAATCTTTTCTGCTTACTAATTGCTGATTCTTCCTCATAGTCATAGCAGAAGNGNCGTGG
NGGTATTCTATTGAGTGGACAGATGTAATTNGCTACGAAATAATGGTTCTTCGCTGTGTCAAGTGNCCATNATTCGTTGG
CACTCACAAGGTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis