Browse Element(s) Details


Os.8849.1.S1_at

Description gb:AK071379.1
DB_XREF= gi:32981402
TID=Os.8849.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095D21, full insert sequence.
FL= gb:AK103440.1 gb:AK071379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0933011/11histidinol-phosphate phosphatase, putative, inositol monophosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09290OsAffx.28359.1.S1_at11/117+4863336..4864648hypothetical protein
LOC_Os07g09300OsAffx.31767.1.S1_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.1.S1_x_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_x_at7/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_at4/117+4866657..4878563POT family protein, expressed
LOC_Os07g09310OsAffx.28360.1.S1_at11/117+4878870..4881033Thioredoxin family protein, expressed
LOC_Os07g09320Os.18245.1.S1_at10/117+4881117..4888386expressed protein
LOC_Os07g09330Os.8849.1.S1_at11/117+4888573..4891968histidinol-phosphate phosphatase, putative, inositol monophosphatase family protein, expressed
LOC_Os07g09340Os.5684.1.S1_at11/117+4912955..4919088Plasma membrane ATPase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0008441molecular_function3'(2'),5'-bisphosphate nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8849.1.S1_at--799--2751Chr07:4890443..4890467 (25 bp)
AAGAAATATCTGTTCGCCCTTGCAA
LOC_Os07g09330
Os.8849.1.S1_at--238--2231Chr07:4890858..4890882 (25 bp)
ACAAGTCCACATTTGTTTGCAGGAG
LOC_Os07g09330
Os.8849.1.S1_at--909--7931Chr07:4890911..4891036 (25 bp)
GGATAAGGTCAAAGTCCCACTGTAT
LOC_Os07g09330
Os.8849.1.S1_at--1034--4171Chr07:4891027..4891051 (25 bp)
CCCACTGTATGGTTGCGATTGCTAT
LOC_Os07g09330
Os.8849.1.S1_at--273--6551Chr07:4891435..4891459 (25 bp)
GATTTTCTCTCATTGGTACCAGTCA
LOC_Os07g09330
Os.8849.1.S1_at--102--8171Chr07:4891495..4891519 (25 bp)
GGAAACAAGCTCCATTGGCCTGTCT
LOC_Os07g09330
Os.8849.1.S1_at--938--7151Chr07:4891516..4891540 (25 bp)
GTCTCTGCGGAATCACGGCCTGAAA
LOC_Os07g09330
Os.8849.1.S1_at--897--2971Chr07:4891750..4891774 (25 bp)
AATGTGGTGGCATCTGGAGACGCCC
LOC_Os07g09330
Os.8849.1.S1_at--953--2711Chr07:4891783..4891807 (25 bp)
AAGCAGGCCCTTGATGCGTTGCAAT
LOC_Os07g09330
Os.8849.1.S1_at--398--1111Chr07:4891883..4891907 (25 bp)
AGTGTATTTTGTATGCTTGCGCCGT
LOC_Os07g09330
Os.8849.1.S1_at--176--4571Chr07:4891901..4891925 (25 bp)
GCGCCGTGAGCGACTAGTTATTCAA
LOC_Os07g09330
Target Sequence 
AAGAAATATCTGTTCGCCCTTGCAATNTCCTGGCACAAGCTTACTTATATACAACAAGTCCACATTTGTTTGCAGGAGAA
GCTGAAGATGCATTTATTCGTGTACGGGATAAGGTCAAAGTCCCACTGTATGGTTGCGATTGCTATGCCTATGCTCTTCT
TGCCTCTGGTTTTGTAGATCTTGTTGTTGAATCAGGATTGAAGCCATATGATTTTCTCTCATTGGTACCAGTCATTGAAG
GAGCTGGAGGTTCAATAACAGATTGGAAAGGAAACAAGCTCCATTGGCCTGTCTCTGCGGAATCACGGCCTGAAAGTTTC
AATGTGGTGGCATCTGGAGACGCCCGTGTCCACAAGCAGGCCCTTGATGCGTTGCAATGGCACTAGTCTGCAAAACACAT
CCAAGTTTGGTCTCTAAACAAACATGAATGTGTTATTCATGTGTCCAATAAACAGTGTATTTTGTATGCTTGCGCCGTGA
GCGACTAGTTATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis