Browse Element(s) Details


OsAffx.28360.1.S1_at

Description tigr:9635.m00893
TID=OsAffx.28360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Thioredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0931011/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09270OsAffx.16170.1.S1_at11/117+4853959..4855313hypothetical protein
LOC_Os07g09280OsAffx.16171.1.S1_s_at11/117+4861486..4862611expressed protein
LOC_Os07g09280OsAffx.16171.1.S1_at11/117+4861486..4862611expressed protein
LOC_Os07g09290OsAffx.28359.1.S1_at11/117+4863336..4864648hypothetical protein
LOC_Os07g09300OsAffx.31767.1.S1_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.1.S1_x_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_x_at7/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_at4/117+4866657..4878563POT family protein, expressed
LOC_Os07g09310OsAffx.28360.1.S1_at11/117+4878870..4881033Thioredoxin family protein, expressed
LOC_Os07g09320Os.18245.1.S1_at10/117+4881117..4888386expressed protein
LOC_Os07g09330Os.8849.1.S1_at11/117+4888573..4891968histidinol-phosphate phosphatase, putative, inositol monophosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0006499biological_processN-terminal protein myristoylation
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005829cellular_componentcytosol
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28360.1.S1_at--704--9831Chr07:4880445..4880469 (25 bp)
TAAATGTGAGTCATGAGTCAACGGG
LOC_Os07g09310
OsAffx.28360.1.S1_at--1138--7631Chr07:4880422..4880446 (25 bp)
GGGTCAAGCCCCTACAAAAGCCAAG
LOC_Os07g09310
OsAffx.28360.1.S1_at--463--9031Chr07:4880378..4880402 (25 bp)
TGCAGACTTGCAGTGCCTCGATCAG
LOC_Os07g09310
OsAffx.28360.1.S1_at--411--1131Chr07:4880367..4880391 (25 bp)
AGTGCCTCGATCAGCTCACTGTAAC
LOC_Os07g09310
OsAffx.28360.1.S1_at--221--1951Chr07:4880350..4880374 (25 bp)
ACTGTAACAAGATGGGCGGCGCCTT
LOC_Os07g09310
OsAffx.28360.1.S1_at--494--3331Chr07:4880261..4880285 (25 bp)
CACTCCAAGGCCAAGTGGGACGAGC
LOC_Os07g09310
OsAffx.28360.1.S1_at--59--1871Chr07:4880242..4880266 (25 bp)
ACGAGCTGTGGGACGCCCACAAGAA
LOC_Os07g09310
OsAffx.28360.1.S1_at--973--7631Chr07:4880233..4880257 (25 bp)
GGGACGCCCACAAGAACACCACAAA
LOC_Os07g09310
OsAffx.28360.1.S1_at--7--1631Chr07:4879951..4879971 (21 bp)
AGCTGGTGGTGATAGACTTCTCGGC
LOC_Os07g09310
OsAffx.28360.1.S1_at--887--7491Chr07:4879946..4879970 (25 bp)
GTGGTGATAGACTTCTCGGCGTCGT
LOC_Os07g09310
OsAffx.28360.1.S1_at--760--9011Chr07:4879910..4879934 (25 bp)
TGCAAGATGATGGAGCCGGTGTTCA
LOC_Os07g09310
Target Sequence 
TAAATGTGAGTCATGAGTCAACGGGGTCAAGCCCCTACAAAAGCCAAGAACCCCAAGCCCTTCCAGCTGCAGACTTGCAG
TGCCTCGATCAGCTCACTGTAACAAGATGGGCGGCGCCTTCTCGACGTCGAAGCCGAAGCCCGCCGCCGGCGAGGAGGGC
GGCGAGTCCGCCGTGGTGGCCGTCCACTCCAAGGCCAAGTGGGACGAGCTGTGGGACGCCCACAAGAACACCACAAAGCT
GGTGGTGATAGACTTCTCGGCGTCGTGGTGTGGGCCGTGCAAGATGATGGAGCCGGTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis