Browse Element(s) Details


OsAffx.16168.1.S1_at

Description tigr:9635.m00884
TID=OsAffx.16168.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0922011/11adenylate isopentenyltransferase 8, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09190Os.6450.1.S1_at11/117+4819507..48229651-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os07g09200OsAffx.28358.1.S1_at11/117+4827210..4827892hypothetical protein
LOC_Os07g09210OsAffx.16167.1.S1_at11/117+4828650..4829408hypothetical protein
LOC_Os07g09220OsAffx.16168.1.S1_at11/117+4832264..4832932adenylate isopentenyltransferase 8, putative
LOC_Os07g09230Os.28943.1.S1_x_at1/117+4834922..4838164retrotransposon protein, putative, unclassified
LOC_Os07g09240NANA7+4838549..4843930retrotransposon protein, putative, unclassified
LOC_Os07g09250OsAffx.16169.1.S1_at11/117+4848566..4849210hypothetical protein
LOC_Os07g09260NANA7+4850081..4850729NA
LOC_Os07g09270OsAffx.16170.1.S1_at11/117+4853959..4855313hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009691biological_processcytokinin biosynthesis
GO:0009824molecular_functionadenylate dimethylallyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16168.1.S1_at--280--6331Chr07:4832374..4832398 (25 bp)
GATGCAAATTTACGATGGCCTGGAT
LOC_Os07g09220
OsAffx.16168.1.S1_at--945--611Chr07:4832431..4832455 (25 bp)
ATGCGGCATATCTCATCACCTTATT
LOC_Os07g09220
OsAffx.16168.1.S1_at--297--6551Chr07:4832480..4832504 (25 bp)
GATTTTCCTGTGTCATTTTTTCGAT
LOC_Os07g09220
OsAffx.16168.1.S1_at--164--2391Chr07:4832524..4832548 (25 bp)
AAACTGCATTGCCAGACGTGGTCAC
LOC_Os07g09220
OsAffx.16168.1.S1_at--1115--5751Chr07:4832538..4832562 (25 bp)
GACGTGGTCACACACCGATTGTGGT
LOC_Os07g09220
OsAffx.16168.1.S1_at--4--7751Chr07:4832560..4832584 (25 bp)
GGTGGGTGGATCTAACTCACTTATC
LOC_Os07g09220
OsAffx.16168.1.S1_at--710--9671Chr07:4832576..4832600 (25 bp)
TCACTTATCCATGGTCTCCTTGTTG
LOC_Os07g09220
OsAffx.16168.1.S1_at--745--7151Chr07:4832614..4832638 (25 bp)
GTCTATTGTGGATCCTTTTGGGCAA
LOC_Os07g09220
OsAffx.16168.1.S1_at--206--10871Chr07:4832639..4832663 (25 bp)
TTGGAGGTTAGCTATCGGCCGACGC
LOC_Os07g09220
OsAffx.16168.1.S1_at--907--1811Chr07:4832660..4832684 (25 bp)
ACGCCTCGATCGCAATGTTGTTTTC
LOC_Os07g09220
OsAffx.16168.1.S1_at--453--31Chr07:4832837..4832861 (25 bp)
ATTGGTGTTCCAGAGCTAAGCGAGT
LOC_Os07g09220
Target Sequence 
GATGCAAATTTACGATGGCCTGGATATTACGACAAACAAGGTTTCTTTACAAGATCGATGCGGCATATCTCATCACCTTA
TTGCGTCCATCCCTCGCAACGCAGGTGATTTTCCTGTGTCATTTTTTCGATCTGCTGCAAAAACCACAATAAACTGCATT
GCCAGACGTGGTCACACACCGATTGTGGTGGGTGGATCTAACTCACTTATCCATGGTCTCCTTGTTGACAATTTTGATTC
GTCTATTGTGGATCCTTTTGGGCAATTGGAGGTTAGCTATCGGCCGACGCCTCGATCGCAATGTTGTTTTCTATGGGTTC
ATGTTAATGAGGTGATTCTTAATGAGTATTTGAAACATCGTGTTGACGACATGGTTGATGCTGGGTTAGTTGAGGAAATT
GAAGAATATTTTGACACATTATCAGTTAATGGACATGTTCCATATGTGGGATTAGGGAAGACCATTGGTGTTCCAGAGCT
AAGCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis