Browse Element(s) Details


Os.18387.1.S1_at

Description gb:AK066389.1
DB_XREF= gi:32976407
TID=Os.18387.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033143I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066C04, full insert sequence.
FL= gb:AK103768.1 gb:AK066389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0940011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09350Os.20602.2.S1_x_at11/117+4926055..4928235hAT family dimerisation domain containing protein
LOC_Os07g09360NANA7+4931580..4931912hypothetical protein
LOC_Os07g09370Os.53755.1.S1_at11/117+4934199..4936212expressed protein
LOC_Os07g09384Os.49930.1.S2_x_at11/117+4938854..4942898expressed protein
LOC_Os07g09384Os.49930.1.S1_at11/117+4938854..4942898expressed protein
LOC_Os07g09400Os.18387.1.S1_at11/117+4948128..4961613expressed protein
LOC_Os07g09410OsAffx.10222.1.S1_x_at2/117+4963554..4965589hypothetical protein
LOC_Os07g09420Os.10872.1.S1_at11/117+4967673..4969425ATPase, AAA family protein, expressed
LOC_Os07g09430OsAffx.28361.1.S1_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09430OsAffx.28361.1.S1_x_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09450Os.49080.1.S1_at10/117+4976267..4979956DNAJ protein, putative, expressed
LOC_Os07g09460OsAffx.16174.1.S1_at11/117+4986453..4996726expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006388biological_processtRNA splicing
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18387.1.S1_at--762--10611Chr07:4961124..4961148 (25 bp)
TTGCGCCGAAGGAGGCAAACACGCT
LOC_Os07g09400
Os.18387.1.S1_at--1105--1831Chr07:4961144..4961168 (25 bp)
ACGCTGCCGCAGCTAGTCACGGAAG
LOC_Os07g09400
Os.18387.1.S1_at--1155--9311Chr07:4961197..4961221 (25 bp)
TCCCATCACCATATCAGGAGTGCTG
LOC_Os07g09400
Os.18387.1.S1_at--533--8031Chr07:4961213..4961237 (25 bp)
GGAGTGCTGGACTTCTACTGACCGA
LOC_Os07g09400
Os.18387.1.S1_at--87--1951Chr07:4961299..4961323 (25 bp)
ACGGCGATAGCTTTGTAGATGCATC
LOC_Os07g09400
Os.18387.1.S1_at--805--4971Chr07:4961319..4961343 (25 bp)
GCATCGAGTTGGAGGGCTCTTGTTT
LOC_Os07g09400
Os.18387.1.S1_at--764--10491Chr07:4961443..4961467 (25 bp)
TTAACTGCTGTCTACGGGCATATCC
LOC_Os07g09400
Os.18387.1.S1_at--633--7591Chr07:4961458..4961482 (25 bp)
GGGCATATCCGAGCTAGCTTAATTA
LOC_Os07g09400
Os.18387.1.S1_at--295--931Chr07:4961499..4961523 (25 bp)
AGGCAAGGGCACAAGATCTAATCTC
LOC_Os07g09400
Os.18387.1.S1_at--457--6031Chr07:4961568..4961592 (25 bp)
GAGATGTTCTTTCGCTACCTGCCAT
LOC_Os07g09400
Os.18387.1.S1_at--1013--4831Chr07:4961581..4961605 (25 bp)
GCTACCTGCCATCTTAAACACGGTT
LOC_Os07g09400
Target Sequence 
TTGCGCCGAAGGAGGCAAACACGCTGCCGCAGCTAGTCACGGAAGGGAAGGCGAAGCGGGTGGCCATAGACCCTCCCATC
ACCATATCAGGAGTGCTGGACTTCTACTGACCGACCACCCTCTTTTTTCTTTATTTTCTNGTNGGCCTAGAGGTTGAACA
TTACTAACAAGTGGTAACGGCGATAGCTTTGTAGATGCATCGAGTTGGAGGGCTCTTGTTTTTTCGGGGATTACAGGACA
GGTCGAGGTATTGTTTTTTATGTTTGAATTTGGTGAAAAATGAAATATAGGAGTATATGCTGCAGTATAAATAAAATTAT
TTAACTGCTGTCTACGGGCATATCCGAGCTAGCTTAATTACTGAGTAGACATGGATAGGCAAGGGCACAAGATCTAATCT
CAGTAGTTGATGATTGATCATGCGTGACTCAGCATTTAAAGTATCGAGATGTTCTTTCGCTACCTGCCATCTTAAACACG
GTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis