Browse Element(s) Details


OsAffx.16174.1.S1_at

Description tigr:9635.m00908
TID=OsAffx.16174.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0946011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09400Os.18387.1.S1_at11/117+4948128..4961613expressed protein
LOC_Os07g09410OsAffx.10222.1.S1_x_at2/117+4963554..4965589hypothetical protein
LOC_Os07g09420Os.10872.1.S1_at11/117+4967673..4969425ATPase, AAA family protein, expressed
LOC_Os07g09430OsAffx.28361.1.S1_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09430OsAffx.28361.1.S1_x_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09450Os.49080.1.S1_at10/117+4976267..4979956DNAJ protein, putative, expressed
LOC_Os07g09460OsAffx.16174.1.S1_at11/117+4986453..4996726expressed protein
LOC_Os07g09470NANA7+4997119..4998846Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os07g09480Os.56296.1.S1_at11/117+5002172..5004026ATPase, AAA family protein, expressed
LOC_Os07g09490OsAffx.28363.1.S1_at11/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09490OsAffx.25760.1.S1_x_at1/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09500OsAffx.16175.1.S1_at10/117+5011088..5012727hypothetical protein
LOC_Os07g09510Os.9419.1.S1_at10/117+5013651..5018509retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16174.1.S1_at--1114--7911Chr07:4993662..4993686 (25 bp)
GGATAGTTGGCCAAGGTGCGACAAA
LOC_Os07g09460
OsAffx.16174.1.S1_at--87--6491Chr07:4993663..4993687 (25 bp)
GATAGTTGGCCAAGGTGCGACAAAG
LOC_Os07g09460
OsAffx.16174.1.S1_at--1149--10031Chr07:4993665..4993689 (25 bp)
TAGTTGGCCAAGGTGCGACAAAGGT
LOC_Os07g09460
OsAffx.16174.1.S1_at--538--7731Chr07:4994005..4994026 (22 bp)
GGTGGTTGTTGGTCTATAAATTCGC
LOC_Os07g09460
OsAffx.16174.1.S1_at--350--7451Chr07:4994005..4994027 (23 bp)
GTGGTTGTTGGTCTATAAATTCGCA
LOC_Os07g09460
OsAffx.16174.1.S1_at--906--7891Chr07:4994005..4994029 (25 bp)
GGTTGTTGGTCTATAAATTCGCAAA
LOC_Os07g09460
OsAffx.16174.1.S1_at--381--6651Chr07:4994006..4994030 (25 bp)
GTTGTTGGTCTATAAATTCGCAAAT
LOC_Os07g09460
OsAffx.16174.1.S1_at--865--7751Chr07:4994012..4994036 (25 bp)
GGTCTATAAATTCGCAAATAATCCC
LOC_Os07g09460
OsAffx.16174.1.S1_at--685--331Chr07:4994017..4994041 (25 bp)
ATAAATTCGCAAATAATCCCTTGTT
LOC_Os07g09460
OsAffx.16174.1.S1_at--311--9851Chr07:4994018..4994042 (25 bp)
TAAATTCGCAAATAATCCCTTGTTA
LOC_Os07g09460
OsAffx.16174.1.S1_at--38--8151Chr07:4994023..4994047 (25 bp)
TCGCAAATAATCCCTTGTTAAAACG
LOC_Os07g09460
Target Sequence 
GGATAGTTGGCCAAGGTGCGACAAAGGTGGGGTGGTTGTTGGTCTATAAATTCGCAAATAATCCCTTGTTAAAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis