Browse Element(s) Details


OsAffx.16175.1.S1_at

Description tigr:9635.m00913
TID=OsAffx.16175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0950010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09460OsAffx.16174.1.S1_at11/117+4986453..4996726expressed protein
LOC_Os07g09470NANA7+4997119..4998846Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os07g09480Os.56296.1.S1_at11/117+5002172..5004026ATPase, AAA family protein, expressed
LOC_Os07g09490OsAffx.28363.1.S1_at11/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09490OsAffx.25760.1.S1_x_at1/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09500OsAffx.16175.1.S1_at10/117+5011088..5012727hypothetical protein
LOC_Os07g09510Os.9419.1.S1_at10/117+5013651..5018509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g09520OsAffx.28364.1.S1_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09520OsAffx.28364.1.S1_x_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09530OsAffx.28365.1.S1_at11/117+5028926..5032124hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16175.1.S1_at--1040--9931Chr07:5012669..5012693 (25 bp)
TACGCACCATTTACACCACCATGGA
LOC_Os07g09500
OsAffx.16175.1.S1_at--192--1731NONE
ACCATGGATATTCAAGGCGGCGGCA
NONE
OsAffx.16175.1.S1_at--582--2972Chr02:6473279..6473769 (25 bp)
AATGGGAAGGCCCAGCTGCCCGTCT
NONE
OsAffx.16175.1.S1_at--1122--7211Chr07:5011359..5011383 (25 bp)
GTCGAGCTACCAGGATGACAGCCAT
LOC_Os07g09500
OsAffx.16175.1.S1_at--925--991Chr07:5011348..5011372 (25 bp)
AGGATGACAGCCATCGCGCCACAGT
LOC_Os07g09500
OsAffx.16175.1.S1_at--108--3551Chr07:5011337..5011361 (25 bp)
CATCGCGCCACAGTGGGATCCGGTG
LOC_Os07g09500
OsAffx.16175.1.S1_at--706--7951Chr07:5011270..5011294 (25 bp)
GGATCCCGTCAGGAGGAGCAGACTT
LOC_Os07g09500
OsAffx.16175.1.S1_at--172--2071Chr07:5011249..5011273 (25 bp)
ACTTGGGCGAATGGTATACGGTGCA
LOC_Os07g09500
OsAffx.16175.1.S1_at--1137--3211Chr07:5011184..5011208 (25 bp)
CAAGCGTGGCGGCATTTACCCTACG
LOC_Os07g09500
OsAffx.16175.1.S1_at--608--1011Chr07:5011150..5011174 (25 bp)
AGGTTGAGCTTGGACTCGTCTCTAC
LOC_Os07g09500
OsAffx.16175.1.S1_at--879--7151Chr07:5011133..5011157 (25 bp)
GTCTCTACTGCGCTTCTTGCAGCGG
LOC_Os07g09500
Target Sequence 
TACGCACCATTTACACCACCATGGATATTCAAGGCGGCGGCAGGTGGGGAGGAGGCGGGGCGAGGCAGGAGAGGAGGTGC
TGCATCCGGCGGCGGAGACGCGGGATAAGGGGAGGGCGGCGGCGACGGGAGAATGGGAAGGCCCAGCTGCCCGTCTGCCT
TGACGCCGCGGTGGCACGCCGTCGTGGTTGCGGGAGAGGCGTCGACGACGAGGAACGGCGCGGCGTGACACAGGGCCGGA
AGCGAGCATGGTGGTGGGAGGAGGAGGGCGGCGGCCGTCGAGCTACCAGGATGACAGCCATCGCGCCACAGTGGGATCCG
GTGGGGACGAGGGGGACACCGACGCCGACGCCGACGAGGAGGAGAGGATCCCGTCAGGAGGAGCAGACTTGGGCGAATGG
TATACGGTGCAAAAGCGGTGGAGGTGGCGGTGGAGTAGGGGAAGGTGCGGGCAAGCGTGGCGGCATTTACCCTACGGGGC
GGGAGAGGTTGAGCTTGGACTCGTCTCTACTGCGCTTCTTGCAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis