Browse Element(s) Details


Os.49096.2.S1_x_at

Description gb:AK110787.1
DB_XREF= gi:32995996
TID=Os.49096.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C08, full insert sequence.
FL= gb:AK110787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1887411/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18820OsAffx.28514.4.S1_s_at11/117+11144578..11147132hypothetical protein
LOC_Os07g18830OsAffx.21264.1.S1_x_at1/117+11149159..11149374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18840OsAffx.28514.2.S1_x_at11/117+11150669..11154641transposon protein, putative, unclassified
LOC_Os07g18850OsAffx.26706.3.S1_x_at10/117+11154937..11161085hypothetical protein
LOC_Os07g18850OsAffx.26706.1.S1_x_at6/117+11154937..11161085hypothetical protein
LOC_Os07g18850OsAffx.26706.1.S1_at1/117+11154937..11161085hypothetical protein
LOC_Os07g18860NANA7+11167126..11167653hypothetical protein
LOC_Os07g18874Os.49096.1.S1_at11/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18874Os.49096.2.S1_x_at11/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18874Os.49096.2.S1_at11/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18874Os.49930.1.S2_x_at1/117+11169203..11181271ABC-2 type transporter family protein, expressed
LOC_Os07g18890OsAffx.5954.5.S1_x_at7/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18890OsAffx.5954.3.S1_x_at3/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18890OsAffx.5954.1.S1_x_at2/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18890OsAffx.5954.2.S1_at1/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18900NANA7+11198632..11201412hypothetical protein
LOC_Os07g18910NANA7+11202218..11203298retrotransposon protein, putative, unclassified
LOC_Os07g18920OsAffx.22699.1.S1_x_at3/117+11203747..11207816retrotransposon protein, putative, unclassified
LOC_Os07g18920OsAffx.13786.1.S1_x_at2/117+11203747..11207816retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49096.2.S1_x_at--968--1651Chr07:11174617..11174641 (25 bp)
AGCGCGGCGTCGTACCACGTCATGA
LOC_Os07g18874
Os.49096.2.S1_x_at--781--1711Chr07:11174696..11174720 (25 bp)
ACCAGCCCAGCACGGAGATGTTCGA
LOC_Os07g18874
Os.49096.2.S1_x_at--305--1311Chr07:11174711..11174735 (25 bp)
AGATGTTCGAGCTCTTCCATGGCCT
LOC_Os07g18874
Os.49096.2.S1_x_at--805--5751Chr07:11174757..11174781 (25 bp)
GACGGTGTATTTTGGAGCAGCTTCA
LOC_Os07g18874
Os.49096.2.S1_x_at--15--9651Chr07:11174779..11174803 (25 bp)
TCAGATGCAATCGAGGTAACAGTTT
LOC_Os07g18874
Os.49096.2.S1_x_at--422--3451Chr07:11174798..11174822 (25 bp)
CAGTTTGACATGTGCGACTAACAGT
LOC_Os07g18874
Os.49096.2.S1_x_at--625--7291Chr07:11174809..11174833 (25 bp)
GTGCGACTAACAGTAATACCGACAT
LOC_Os07g18874
Os.49096.2.S1_x_at--397--2911Chr07:11174835..11174859 (25 bp)
AAGGACCTCATGAGCTAGGGATGCA
LOC_Os07g18874
Os.49096.2.S1_x_at--74--6331Chr07:11174854..11174878 (25 bp)
GATGCAAGTAGTCAATCCCTAAAAA
LOC_Os07g18874
Os.49096.2.S1_x_at--1084--3051Chr07:11174880..11174904 (25 bp)
AATCTGCTTACTAATTCACTTATCG
LOC_Os07g18874
Os.49096.2.S1_x_at--211--3731Chr07:11174890..11174914 (25 bp)
CTAATTCACTTATCGTATGGTTATA
LOC_Os07g18874
Target Sequence 
AGCGCGGCGTCGTACCACGTCATGAGCCGCATCGCCGGCTTCGCCAGGAGGGACGGGATGACGGTCGTCGCCGCCGTGCA
CCAGCCCAGCACGGAGATGTTCGAGCTCTTCCATGGCCTCTGCCTCCTGGCCACTGGGAGGACGGTGTATTTTGGAGCAG
CTTCAGATGCAATCGAGGTAACAGTTTGACATGTGCGACTAACAGTAATACCGACATCAAGGACCTCATGAGCTAGGGAT
GCAAGTAGTCAATCCCTAAAAAAAATCTGCTTACTAATTCACTTATCGTATGGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49096.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis