Browse Element(s) Details


OsAffx.28514.4.S1_s_at

Description tigr:9635.m01898
TID=OsAffx.28514.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0309011/11transposon protein, putative, unclassified
LOC_Os01g1674011/11transposon protein, putative, unclassified
LOC_Os07g1882011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03050Os.54705.2.S1_x_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03050Os.54705.2.S1_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03060Os.54003.1.S1_at11/115+1173107..1177239expressed protein
LOC_Os05g03070OsAffx.14519.1.S1_s_at11/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03070OsAffx.14519.1.S1_at10/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03080OsAffx.26706.1.S1_x_at11/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.1.S1_at9/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.3.S1_x_at7/115+1182668..1191892hypothetical protein
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed
LOC_Os05g03110OsAffx.14522.1.S1_at11/115+1209039..1210523PWWP domain containing protein, expressed
LOC_Os05g03120Os.51828.1.S1_at11/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120Os.51828.2.S1_x_at6/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120OsAffx.19113.1.A1_at1/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03130OsAffx.14523.1.S1_s_at11/115+1224313..1225030expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28514.4.S1_s_at--577--373Chr07:11144638..11144662 (25 bp)
ATCACAAGTTTGAGCGATTTGGAGA
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--1135--8153Chr07:11146107..11146131 (25 bp)
GGCAAAAAATCACAGGGTCTGAAGA
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--415--13Chr07:11146250..11146274 (25 bp)
AAAAATTGAAGCTGGAACTAGTACT
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--1110--9693Chr07:11146611..11146635 (25 bp)
TCAAATGATCTAAAGAAGGCTGATG
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--289--13Chr07:11146655..11146767 (25 bp)
AAAGACATCGAGAGGTTTTGAAACA
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--54--6153Chr07:11146755..11146778 (24 bp)
GAGGTTTTGAAACAGATACCGACAA
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--74--2493Chr07:11146764..11146788 (25 bp)
AACAGATACCGACAAAAAAGCACAG
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--246--1413Chr07:11146796..11146817 (22 bp)
AGACAATGAAGCAATTACCAGGAAT
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--607--6233Chr07:11146904..11146928 (25 bp)
GATGGAACTTGTACTGCTTTGGTTC
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--660--9673Chr07:11146931..11147061 (25 bp)
TCAAATTCAGGTCTAGCATTCCTAG
LOC_Os07g18820
OsAffx.28514.4.S1_s_at--401--133Chr07:11147044..11147065 (22 bp)
ATTCAGGTCTAGCATTCCTAGAGAA
LOC_Os07g18820
Target Sequence 
ATCACAAGTTTGAGCGATTTGGAGAAGGGAAAAGGTGAAGAGCAGGAAAAATCAACAGGAACAAAAGAGAAGAAATTGAA
AATATCAAATGTCCTAAAGATGGCGGATGAAAAGCAATTCGAAGCAGGGAAAACATCAAGTGGCAAAAAATCACAGGGTC
TGAAGATAATGAAGCAATTAGCAGGAAAAATTGAAGCTGGAACTAGTACTAATTCTGTTAATTCAAAATCAGGAACAGAA
GAGAAGATTTTGAAAATATCAAATGATCTAAAGAAGGCTGATGAAAAGCAATTACAAGAAGTAAAGACATCGAGAGGTTT
TGAAACAGATACCGACAAAAAAGCACAGGGATTTAAGACAATGAAGCAATTACCAGGAATTTTCAAAGATGGAACTTGTA
CTGCTTTGGTTCAATCAAATTCAGGTCTAGCATTCCTAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28514.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis