Browse Element(s) Details


OsAffx.14519.1.S1_s_at

Description tigr:9633.m00226
TID=OsAffx.14519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to phosphatephosphoenolpyruvate translocator protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0307011/11phosphate translocator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03050Os.54705.2.S1_x_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03050Os.54705.2.S1_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03060Os.54003.1.S1_at11/115+1173107..1177239expressed protein
LOC_Os05g03070OsAffx.14519.1.S1_s_at11/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03070OsAffx.14519.1.S1_at10/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03080OsAffx.26706.1.S1_x_at11/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.1.S1_at9/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.3.S1_x_at7/115+1182668..1191892hypothetical protein
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14519.1.S1_s_at--999--6831Chr05:1177782..1177806 (25 bp)
GTTTCCATCCTGATATTCAGAAACC
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--1117--10491Chr05:1177767..1177791 (25 bp)
TTCAGAAACCCGGTAACCTTCATGG
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--1011--4831Chr05:1177738..1177762 (25 bp)
GCTAGGCTACGGGATAACAGTCGCA
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--1069--1111Chr05:1177720..1177744 (25 bp)
AGTCGCAGGCGTTGTTCTTTACGGG
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--788--1331Chr05:1177652..1177676 (25 bp)
AGAGTCACTTGACCTCATCAGTTTG
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--45--1211Chr05:1177633..1177657 (25 bp)
AGTTTGGTAGCTCCTGCACTCCAGG
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--696--10131Chr05:1177584..1177608 (25 bp)
TATGCATATGCACCTCTTACACTGC
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--204--1991Chr05:1177564..1177588 (25 bp)
ACTGCCAACCTGATGTGTTCTGATT
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--960--431Chr05:1177503..1177527 (25 bp)
ATCTTTTTCTACATGCTCCAGAAGT
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--1149--2091Chr05:1177493..1177517 (25 bp)
ACATGCTCCAGAAGTCCAGATGCGC
LOC_Os05g03070
OsAffx.14519.1.S1_s_at--1032--4931Chr05:1177446..1177470 (25 bp)
GCATTGGTGATCGTGCTAGCTCATC
LOC_Os05g03070
Target Sequence 
GTTTCCATCCTGATATTCAGAAACCCGGTAACCTTCATGGGGATGCTAGGCTACGGGATAACAGTCGCAGGCGTTGTTCT
TTACGGGGAGGCCAAGAAGAGGAGCAAGTGAGATGAGCCCAATTAAAAAAAGAGTCACTTGACCTCATCAGTTTGGTAGC
TCCTGCACTCCAGGGACATAAAATGCTGCTGATAACATTATGCATATGCACCTCTTACACTGCCAACCTGATGTGTTCTG
ATTTAATCATTGATGGGATGATGAAGATGACAATTTGCAATCTTTTTCTACATGCTCCAGAAGTCCAGATGCGCAATCTG
GGATCCTAAAGTGTAGGCATTGGTGATCGTGCTAGCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14519.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis