Browse Element(s) Details


OsAffx.14519.1.S1_at

Description tigr:9633.m00226
TID=OsAffx.14519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to phosphatephosphoenolpyruvate translocator protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0307010/11phosphate translocator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03050Os.54705.2.S1_x_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03050Os.54705.2.S1_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03060Os.54003.1.S1_at11/115+1173107..1177239expressed protein
LOC_Os05g03070OsAffx.14519.1.S1_s_at11/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03070OsAffx.14519.1.S1_at10/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03080OsAffx.26706.1.S1_x_at11/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.1.S1_at9/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.3.S1_x_at7/115+1182668..1191892hypothetical protein
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14519.1.S1_at--532--9391Chr05:1178018..1178042 (25 bp)
TCGTTAGCCTACTTTGTGAACCTCA
LOC_Os05g03070
OsAffx.14519.1.S1_at--919--6771Chr05:1178016..1178040 (25 bp)
GTTAGCCTACTTTGTGAACCTCACA
LOC_Os05g03070
OsAffx.14519.1.S1_at--49--8671Chr05:1178004..1178028 (25 bp)
TGTGAACCTCACAAACTTCCTAGTC
LOC_Os05g03070
OsAffx.14519.1.S1_at--350--8991Chr05:1178002..1178026 (25 bp)
TGAACCTCACAAACTTCCTAGTCAC
LOC_Os05g03070
OsAffx.14519.1.S1_at--426--9691Chr05:1177996..1178020 (25 bp)
TCACAAACTTCCTAGTCACCAAGCA
LOC_Os05g03070
OsAffx.14519.1.S1_at--178--2371Chr05:1177992..1178016 (25 bp)
AAACTTCCTAGTCACCAAGCACACT
LOC_Os05g03070
OsAffx.14519.1.S1_at--465--2051Chr05:1177990..1178014 (25 bp)
ACTTCCTAGTCACCAAGCACACTAG
LOC_Os05g03070
OsAffx.14519.1.S1_at--432--4371Chr05:1177833..1177988 (25 bp)
CCACTCACTCTCCAAGTTCTTGGAA
LOC_Os05g03070
OsAffx.14519.1.S1_at--808--4311Chr07:25998098..25998141 (24 bp)
CCAAGTTCTTGGAAATGCGAAAGGG
NONE
OsAffx.14519.1.S1_at--115--8972Chr03:35678508..35678527 (20 bp)
TGACAATTTGCAATCTTTTTCTACA
NONE
OsAffx.14519.1.S1_at--52--2271Chr05:1177349..1177373 (25 bp)
AAATCATTGTAAGTTTGTGCTTGCA
LOC_Os05g03070
Target Sequence 
TCGTTAGCCTACTTTGTGAACCTCACAAACTTCCTAGTCACCAAGCACACTAGCCCACTCACTCTCCAAGTTCTTGGAAA
TGCGAAAGGGGCTGTTGCTGTTGTGGTTTCCATCCTGATATTCAGAAACCCGGTAACCTTCATGGGGATGCTAGGCTACG
GGATAACAGTCGCAGGCGTTGTTCTTTACGGGGAGGCCAAGAAGAGGAGCAAGTGAGATGAGCCCAATTAAAAAAAGAGT
CACTTGACCTCATCAGTTTGGTAGCTCCTGCACTCCAGGGACATAAAATGCTGCTGATAACATTATGCATATGCACCTCT
TACACTGCCAACCTGATGTGTTCTGATTTAATCATTGATGGGATGATGAAGATGACAATTTGCAATCTTTTTCTACATGC
TCCAGAAGTCCAGATGCGCAATCTGGGATCCTAAAGTGTAGGCATTGGTGATCGTGCTAGCTCATCACACACTGTTAGAT
CAGATGTATTGATGCTTTGTAGTAACAATGATGTGTACTGTAATCAGTGAGATGCAAAAAATCATTGTAAGTTTGTGCTT
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis