Browse Element(s) Details


Os.54705.2.S1_at

Description gb:AK106510.1
DB_XREF= gi:32991719
TID=Os.54705.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H03, full insert sequence.
FL= gb:AK106510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0305011/11DNA repair protein RAD51 homolog 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03050Os.54705.2.S1_x_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03050Os.54705.2.S1_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03060Os.54003.1.S1_at11/115+1173107..1177239expressed protein
LOC_Os05g03070OsAffx.14519.1.S1_s_at11/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03070OsAffx.14519.1.S1_at10/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03080OsAffx.26706.1.S1_x_at11/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.1.S1_at9/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.3.S1_x_at7/115+1182668..1191892hypothetical protein
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006281biological_processDNA repair
GO:0006302biological_processdouble-strand break repair
GO:0007126biological_processmeiosis
GO:0007131biological_processmeiotic recombination
GO:0007140biological_processmale meiosis
GO:0007143biological_processfemale meiosis
GO:0016444biological_processsomatic cell DNA recombination
GO:0000150molecular_functionrecombinase activity
GO:0003684molecular_functiondamaged DNA binding
GO:0003697molecular_functionsingle-stranded DNA binding
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54705.2.S1_at--1137--2631Chr05:1164304..1164328 (25 bp)
AACCAATTTAATCTCAGCGCACTCT
LOC_Os05g03050
Os.54705.2.S1_at--296--3131Chr05:1164300..1164324 (25 bp)
AATTTAATCTCAGCGCACTCTGCAT
LOC_Os05g03050
Os.54705.2.S1_at--482--4591Chr05:1164288..1164312 (25 bp)
GCGCACTCTGCATCAACTTCAGAAG
LOC_Os05g03050
Os.54705.2.S1_at--1130--5331Chr05:1164267..1164291 (25 bp)
GAAGTTATGTTGCATACCATGTATA
LOC_Os05g03050
Os.54705.2.S1_at--213--4951Chr05:1164256..1164280 (25 bp)
GCATACCATGTATATTTATTTAGAG
LOC_Os05g03050
Os.54705.2.S1_at--928--6111Chr05:1164201..1164225 (25 bp)
GAGTGTAATAGCATAATCTTTAATT
LOC_Os05g03050
Os.54705.2.S1_at--810--3671Chr05:1164184..1164208 (25 bp)
CTTTAATTTTTGCTACTGAATTGCA
LOC_Os05g03050
Os.54705.2.S1_at--305--4851Chr05:1164173..1164197 (25 bp)
GCTACTGAATTGCATTCCGACTGTA
LOC_Os05g03050
Os.54705.2.S1_at--38--3171Chr05:1164166..1164190 (25 bp)
AATTGCATTCCGACTGTAATAGACA
LOC_Os05g03050
Os.54705.2.S1_at--627--2111Chr05:1164144..1164168 (25 bp)
ACAGTTACCAATCCATCTTTACGTA
LOC_Os05g03050
Os.54705.2.S1_at--800--1691Chr05:1164138..1164162 (25 bp)
ACCAATCCATCTTTACGTAATTATT
LOC_Os05g03050
Target Sequence 
AACCAATTTAATCTCAGCGCACTCTGCATCAACTTCAGAAGTTATGTTGCATACCATGTATATTTATTTAGAGAGTAGCT
TAAATTGTAAGTAATCTAGGAAAGAGTGTAATAGCATAATCTTTAATTTTTGCTACTGAATTGCATTCCGACTGTAATAG
ACAGTTACCAATCCATCTTTACGTAATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54705.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis