Browse Element(s) Details


Os.54003.1.S1_at

Description gb:AK101222.1
DB_XREF= gi:32986431
TID=Os.54003.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031D02, full insert sequence.
FL= gb:AK101222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03050Os.54705.2.S1_x_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03050Os.54705.2.S1_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03060Os.54003.1.S1_at11/115+1173107..1177239expressed protein
LOC_Os05g03070OsAffx.14519.1.S1_s_at11/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03070OsAffx.14519.1.S1_at10/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03080OsAffx.26706.1.S1_x_at11/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.1.S1_at9/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.3.S1_x_at7/115+1182668..1191892hypothetical protein
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54003.1.S1_at--129--9411Chr05:1176652..1176676 (25 bp)
TCGTCTATCTTGAGTCAGCCGGAAT
LOC_Os05g03060
Os.54003.1.S1_at--1151--2711Chr05:1176708..1176732 (25 bp)
AAGCAGTGTCCAGAGCAAGGCATCA
LOC_Os05g03060
Os.54003.1.S1_at--1000--1251Chr05:1176758..1176782 (25 bp)
AGATAGAACTTGAGCCTTCCCAGGC
LOC_Os05g03060
Os.54003.1.S1_at--1099--5471Chr05:1176787..1176811 (25 bp)
GAACATGAAGTGTGCACACCCCAGC
LOC_Os05g03060
Os.54003.1.S1_at--710--1431Chr05:1176863..1176887 (25 bp)
AGAACATTCCGGCTCTGCATCAGAA
LOC_Os05g03060
Os.54003.1.S1_at--1023--691Chr05:1176899..1176923 (25 bp)
ATGATGGCGCTGGTTCGTTAGCAGT
LOC_Os05g03060
Os.54003.1.S1_at--318--6531Chr05:1176930..1176954 (25 bp)
GATTTGCCAGAGATTGTCCACCATT
LOC_Os05g03060
Os.54003.1.S1_at--103--4731Chr05:1177017..1177041 (25 bp)
GCTGGTTGTTTCTGATACATCCTTA
LOC_Os05g03060
Os.54003.1.S1_at--1010--8991Chr05:1177063..1177087 (25 bp)
TGAAGTTCTTTCTCTGGCATGTGTT
LOC_Os05g03060
Os.54003.1.S1_at--1062--3011Chr05:1177115..1177139 (25 bp)
AATCCTTTTTCTGTACATCGCATGC
LOC_Os05g03060
Os.54003.1.S1_at--180--1011Chr05:1177147..1177171 (25 bp)
AGGATTTCGCTCTCGGTTGTAATCA
LOC_Os05g03060
Target Sequence 
TCGTCTATCTTGAGTCAGCCGGAATCGAGACTCGCAGCCTCACCTCATGAGAAAAAAAGCAGTGTCCAGAGCAAGGCATC
ACCTTTACTCCCCCTTGAAGTTGTACAGATAGAACTTGAGCCTTCCCAGGCGATGGAACATGAAGTGTGCACACCCCAGC
CCTGCCCAGTGGTAGCAGCAGCAGCAGCAGCAGCAGCAGACACAGCAAAGGAGAACATTCCGGCTCTGCATCAGAACATC
CAGCCAAATGATGGCGCTGGTTCGTTAGCAGTTGATCTGATTTGCCAGAGATTGTCCACCATTTCTCTTGGGGACGCCAC
CGACCTGGCCTCTTGATCTTGTAGAGGGATTTAGTCGTATGGTATGCTGGTTGTTTCTGATACATCCTTATTATTGGAAG
GCAATTGCAGCTGAAGTTCTTTCTCTGGCATGTGTTGTTTTAACTCTTATGTCTTGAGTGTAAAATCCTTTTTCTGTACA
TCGCATGCCATGATAAGGATTTCGCTCTCGGTTGTAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis