Browse Element(s) Details


Os.51828.2.S1_x_at

Description gb:AK072968.1
DB_XREF= gi:32982991
TID=Os.51828.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148M12, full insert sequence.
FL= gb:AK072968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g031206/11retrotransposon protein, putative, unclassified, expressed
LOC_Os12g426505/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed
LOC_Os05g03110OsAffx.14522.1.S1_at11/115+1209039..1210523PWWP domain containing protein, expressed
LOC_Os05g03120Os.51828.1.S1_at11/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120Os.51828.2.S1_x_at6/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120OsAffx.19113.1.A1_at1/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03130OsAffx.14523.1.S1_s_at11/115+1224313..1225030expressed protein
LOC_Os05g03140Os.35209.1.S1_s_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03140Os.53955.1.S1_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03150OsAffx.26707.1.S1_at9/115+1238093..1239939expressed protein
LOC_Os05g03160NANA5+1244665..1245102hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51828.2.S1_x_at--558--731Chr05:1222098..1222122 (25 bp)
ATGTTGATGGCAGCTTTGGCAGCCC
LOC_Os05g03120
Os.51828.2.S1_x_at--787--10871Chr05:1222113..1222137 (25 bp)
TTGGCAGCCCTGATCATGGTGAAGC
LOC_Os05g03120
Os.51828.2.S1_x_at--779--7711Chr05:1222150..1222174 (25 bp)
GGTGGTAACTATCCCCAATGGCAAT
LOC_Os05g03120
Os.51828.2.S1_x_at--702--5771Chr05:1222267..1222291 (25 bp)
GACGATCGAGACGAAGACCGCCTAC
LOC_Os05g03120
Os.51828.2.S1_x_at--810--5811Chr05:1222282..1222306 (25 bp)
GACCGCCTACGAAATGCTGGAGAAT
LOC_Os05g03120
Os.51828.2.S1_x_at--308--9051Chr05:1222773..1222797 (25 bp)
TGCAGTCTGACCAGTGGCGCAAGGC
LOC_Os05g03120
Os.51828.2.S1_x_at--482--5371Chr12:26472802..26472826 (25 bp)
GAAGACAGATAACTCGATCTTGTGA
LOC_Os12g42650
Os.51828.2.S1_x_at--1122--4032Chr01:8522543..8522925 (25 bp)
CGATCTTGTGATTAATTTAGCCGCA
NONE
Os.51828.2.S1_x_at--377--3131Chr12:26472775..26472799 (25 bp)
AATTTAGCCGCAATTGACCAATTTT
LOC_Os12g42650
Os.51828.2.S1_x_at--515--10851Chr12:26472748..26472772 (25 bp)
TTGGCAATTGGCTGTGTTCTTCTCT
LOC_Os12g42650
Os.51828.2.S1_x_at--312--10552Chr09:942107..942154 (24 bp)
TTCTTCTCTCTTTCCAAAAATTTTG
NONE
Target Sequence 
ATGTTGATGGCAGCTTTGGCAGCCCTGATCATGGTGAAGCTGTGGAGAAGGTGGTGGTAACTATCCCCAATGGCAATGGC
AGCTGTGGTGGTTCTGGCGCAGAGATTGAGCAGCTGCGGACGGCGCTCGAGGTGGCTGAGATTAGGTACCAGGAAGAACA
AACTCGCACGACGATCGAGACGAAGACCGCCTACGAAATGCTGGAGAATGCCAAGTCAGAGTACGACAAGAGCAGCCGGC
GCGCCGCCAGGGCGTCGGAGCAGCTGGACGCGGCGCAGGCGGCCAGCGTCGAGATGGAGGCCGAGCTGCGGCGCCTCCGG
GTGCAGTCTGACCAGTGGCGCAAGGCGCCGCCGCCCTCTTCTTCTTCTCCTTCACCACGGTTGTTGGTTTCTTGGCTTTT
CTCCTCCCTTTTCTTGGGAAAAGAGAAGACAGATAACTCGATCTTGTGATTAATTTAGCCGCAATTGACCAATTTTTTTT
GGCAATTGGCTGTGTTCTTCTCTCTTTCCAAAAATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51828.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis