Browse Element(s) Details


Os.53955.1.S1_at

Description gb:AK101005.1
DB_XREF= gi:32986214
TID=Os.53955.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147M12, full insert sequence.
FL= gb:AK101005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0314011/11senescence-associated family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed
LOC_Os05g03110OsAffx.14522.1.S1_at11/115+1209039..1210523PWWP domain containing protein, expressed
LOC_Os05g03120Os.51828.1.S1_at11/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120Os.51828.2.S1_x_at6/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120OsAffx.19113.1.A1_at1/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03130OsAffx.14523.1.S1_s_at11/115+1224313..1225030expressed protein
LOC_Os05g03140Os.35209.1.S1_s_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03140Os.53955.1.S1_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03150OsAffx.26707.1.S1_at9/115+1238093..1239939expressed protein
LOC_Os05g03160NANA5+1244665..1245102hypothetical protein
LOC_Os05g03174Os.20262.1.S1_at10/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03174Os.52448.2.S1_at3/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53955.1.S1_at--574--5271Chr05:1234291..1234315 (25 bp)
GAATGATTAACTCCCTCAAAGCAAT
LOC_Os05g03140
Os.53955.1.S1_at--68--7451Chr05:1234325..1234349 (25 bp)
GTGTACAACTCCCTCAAAGCAGTGT
LOC_Os05g03140
Os.53955.1.S1_at--250--3271Chr05:1234378..1234402 (25 bp)
CAACTCCAGGCTATGCACCAAAAGA
LOC_Os05g03140
Os.53955.1.S1_at--1143--3151Chr05:1234418..1234442 (25 bp)
AATTGACTGCCTGGTCGATTTGAGT
LOC_Os05g03140
Os.53955.1.S1_at--235--6531Chr05:1234434..1234458 (25 bp)
GATTTGAGTCTTTGTCTATGTCGTT
LOC_Os05g03140
Os.53955.1.S1_at--1061--10351Chr05:1234463..1234487 (25 bp)
TTTTTCCCCTTAGGTGACCTTGCTG
LOC_Os05g03140
Os.53955.1.S1_at--1078--7371Chr05:1234476..1234500 (25 bp)
GTGACCTTGCTGGTGCAATTGCTAA
LOC_Os05g03140
Os.53955.1.S1_at--786--9751Chr05:1234514..1234538 (25 bp)
TAAGACGTTTCAGAGTTGCCACTAT
LOC_Os05g03140
Os.53955.1.S1_at--130--8151Chr05:1234582..1234606 (25 bp)
GGACAAGGTCATTTTCCTAGCTTTT
LOC_Os05g03140
Os.53955.1.S1_at--2--9531Chr05:1234607..1234631 (25 bp)
TCTCTCTTCTTTTCTGGATACCAAA
LOC_Os05g03140
Os.53955.1.S1_at--583--7731Chr05:1234638..1234662 (25 bp)
GGTGGACCACAGCATTAGCATGATT
LOC_Os05g03140
Target Sequence 
GAATGATTAACTCCCTCAAAGCAATCTTTGAAGTGTGTACAACTCCCTCAAAGCAGTGTCCTTTTTTATGGAGCAAGTTG
GTACCTCCAACTCCAGGCTATGCACCAAAAGAAACCTATGTGACAAGAATTGACTGCCTGGTCGATTTGAGTCTTTGTCT
ATGTCGTTTATTTTTTTCCCCTTAGGTGACCTTGCTGGTGCAATTGCTAAGACCAAATAATACTAAGACGTTTCAGAGTT
GCCACTATTGCAGTGGTAAGAAGTAGAATCTGCAATATGCTGTGATGCTGAGGACAAGGTCATTTTCCTAGCTTTTTCTC
TCTTCTTTTCTGGATACCAAAAGACAAGGTGGACCACAGCATTAGCATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis