Browse Element(s) Details


OsAffx.26707.1.S1_at

Description tigr:9633.m00236
TID=OsAffx.26707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g031509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03120Os.51828.1.S1_at11/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120Os.51828.2.S1_x_at6/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120OsAffx.19113.1.A1_at1/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03130OsAffx.14523.1.S1_s_at11/115+1224313..1225030expressed protein
LOC_Os05g03140Os.35209.1.S1_s_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03140Os.53955.1.S1_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03150OsAffx.26707.1.S1_at9/115+1238093..1239939expressed protein
LOC_Os05g03160NANA5+1244665..1245102hypothetical protein
LOC_Os05g03174Os.20262.1.S1_at10/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03174Os.52448.2.S1_at3/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26707.1.S1_at--682--9151NONE
TGCGCCGTCATGTGCCTACTGTTAA
NONE
OsAffx.26707.1.S1_at--157--7131NONE
GTCATGTGCCTACTGTTAAGCTTCT
NONE
OsAffx.26707.1.S1_at--899--771Chr05:1238785..1238805 (21 bp)
ATGTGCCTACTGTTAAGCTTCTGCT
LOC_Os05g03150
OsAffx.26707.1.S1_at--868--4451Chr05:1238781..1238805 (25 bp)
GCCTACTGTTAAGCTTCTGCTTGAA
LOC_Os05g03150
OsAffx.26707.1.S1_at--34--9491Chr05:1238766..1238790 (25 bp)
TCTGCTTGAATAGCTTATCATGGCA
LOC_Os05g03150
OsAffx.26707.1.S1_at--274--9011Chr05:1238760..1238784 (25 bp)
TGAATAGCTTATCATGGCAGCATGA
LOC_Os05g03150
OsAffx.26707.1.S1_at--948--3491Chr05:1238748..1238772 (25 bp)
CATGGCAGCATGAGTATAGAAATCT
LOC_Os05g03150
OsAffx.26707.1.S1_at--250--5591Chr05:1238730..1238754 (25 bp)
GAAATCTCATTGTTAACACGCTTGC
LOC_Os05g03150
OsAffx.26707.1.S1_at--93--3751Chr05:1238725..1238749 (25 bp)
CTCATTGTTAACACGCTTGCATTTT
LOC_Os05g03150
OsAffx.26707.1.S1_at--957--2471Chr05:1238716..1238740 (25 bp)
AACACGCTTGCATTTTGTTTTAATT
LOC_Os05g03150
OsAffx.26707.1.S1_at--431--2051Chr05:1238383..1238714 (25 bp)
ACATTTTAAAAAGGGCATGCGTCAT
LOC_Os05g03150
Target Sequence 
TGCGCCGTCATGTGCCTACTGTTAAGCTTCTGCTTGAATAGCTTATCATGGCAGCATGAGTATAGAAATCTCATTGTTAA
CACGCTTGCATTTTGTTTTAATTTACATTTTAAAAAGGGCATGCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis