Browse Element(s) Details


Os.20262.1.S1_at

Description gb:AK120892.1
DB_XREF= gi:37990515
TID=Os.20262.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029N22, full insert sequence.
FL= gb:AK120892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0317410/11beta3-glucuronyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03140Os.35209.1.S1_s_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03140Os.53955.1.S1_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03150OsAffx.26707.1.S1_at9/115+1238093..1239939expressed protein
LOC_Os05g03160NANA5+1244665..1245102hypothetical protein
LOC_Os05g03174Os.20262.1.S1_at10/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03174Os.52448.2.S1_at3/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03190Os.11677.1.S1_x_at10/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03190Os.11677.2.S1_at7/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03200OsAffx.4238.1.S1_at11/115+1273739..1276638expressed protein
LOC_Os05g03200Os.48994.1.A1_at10/115+1273739..1276638expressed protein
LOC_Os05g03210Os.52836.1.S1_at11/115+1278471..1280225F-box domain containing protein, expressed
LOC_Os05g03220NANA5+1281779..1283008retrotransposon protein, putative, unclassified
LOC_Os05g03230OsAffx.21465.1.S1_x_at2/115+1284947..1286285retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20262.1.S1_at--32--8271Chr05:1261618..1261642 (25 bp)
GGCAGGCCGACGTCATTACCAGACA
LOC_Os05g03174
Os.20262.1.S1_at--792--10451NONE
TTACCAGACACTTCACAGGATTCCA
NONE
Os.20262.1.S1_at--8--3491Chr05:1262930..1262954 (25 bp)
CAGGATTCCATCAAGTTTGTGCAAG
LOC_Os05g03174
Os.20262.1.S1_at--211--9091Chr05:1263002..1263026 (25 bp)
TGCTCCCAAATCATGGTTTGGCAAT
LOC_Os05g03174
Os.20262.1.S1_at--983--5191Chr05:1263022..1263046 (25 bp)
GCAATATACTATGCCCATGCAAGTT
LOC_Os05g03174
Os.20262.1.S1_at--986--651Chr05:1263038..1263062 (25 bp)
ATGCAAGTTCATGCCCAAACCTCTA
LOC_Os05g03174
Os.20262.1.S1_at--921--2611Chr05:1263055..1263079 (25 bp)
AACCTCTACTCCAAAAACTCACAAT
LOC_Os05g03174
Os.20262.1.S1_at--891--7551Chr05:1263240..1263264 (25 bp)
GGGCCATGAATTGTCTGCGGAAAAT
LOC_Os05g03174
Os.20262.1.S1_at--612--10831Chr05:1263299..1263323 (25 bp)
TTGTGATTCTTTAACTCTGCTCCTC
LOC_Os05g03174
Os.20262.1.S1_at--601--9611Chr05:1263340..1263364 (25 bp)
TCATCTCCTGGGTAATCTTTTGTGA
LOC_Os05g03174
Os.20262.1.S1_at--596--2451Chr05:1263381..1263405 (25 bp)
AACAAATTCCCCTTGTGGATTGCAA
LOC_Os05g03174
Target Sequence 
GGCAGGCCGACGTCATTACCAGACACTTCACAGGATTCCATCAAGTTTGTGCAAGAGGTTGTATTGGAAGACAGGACCAA
GCTAAAGGGGATTCCCNNAGATTGCTCCCAAATCATGGTTTGGCAATATACTATGCCCATGCAAGTTCATGCCCAAACCT
CTACTCCAAAAACTCACAATAGAAGGTAGGGAGAGAACAAGCAAGAGGATTCTCCAGAAAGGGAAAAAAGTGGGAAGTTG
ATGTAAATGTGGTGAAAACAAAAGAAAAGGAAGAAGGTTGTTTACACTGAGTTTTTTTCCCTTTCTTTTTCTCTCATTTT
TGTTTTCTTTTTAGTTTGGGGGGCCATGAATTGTCTGCGGAAAATCTCCCCCCAAGCAATAGTATTTATTCAGATTCACT
TGTGATTCTTTAACTCTGCTCCTCTCATCTTCATCTCATCTCATCTCCTGGGTAATCTTTTGTGAGGGGGATGTTGCTTC
AAACAAATTCCCCTTGTGGATTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis