Browse Element(s) Details


Os.48994.1.A1_at

Description gb:CR292337
DB_XREF= gi:44678903
DB_XREF=CR292337
CLONE=y690e08p3
TID=Os.48994.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48994 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0320010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03174Os.20262.1.S1_at10/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03174Os.52448.2.S1_at3/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03190Os.11677.1.S1_x_at10/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03190Os.11677.2.S1_at7/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03200OsAffx.4238.1.S1_at11/115+1273739..1276638expressed protein
LOC_Os05g03200Os.48994.1.A1_at10/115+1273739..1276638expressed protein
LOC_Os05g03210Os.52836.1.S1_at11/115+1278471..1280225F-box domain containing protein, expressed
LOC_Os05g03220NANA5+1281779..1283008retrotransposon protein, putative, unclassified
LOC_Os05g03230OsAffx.21465.1.S1_x_at2/115+1284947..1286285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03240OsAffx.4239.1.S1_at11/115+1288595..1289616hypothetical protein
LOC_Os05g03250NANA5+1291974..1293965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03260NANA5+1295248..1295865hypothetical protein
LOC_Os05g03270Os.47463.1.S1_x_at6/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03270Os.14491.2.S1_x_at5/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48994.1.A1_at--221--9731Chr05:1273961..1273985 (25 bp)
TCAAGATGTTGCTGACTAAAAAACA
LOC_Os05g03200
Os.48994.1.A1_at--50--1551Chr05:1273931..1273955 (25 bp)
AGCATTGAAGATTGCTATAGGTCAA
LOC_Os05g03200
Os.48994.1.A1_at--159--271Chr05:1273915..1273939 (25 bp)
ATAGGTCAAAGTTTAGTGAGATTCT
LOC_Os05g03200
Os.48994.1.A1_at--324--7391Chr05:1273900..1273924 (25 bp)
GTGAGATTCTTTTACGCCTGACTGA
LOC_Os05g03200
Os.48994.1.A1_at--792--6051Chr05:1273898..1273922 (25 bp)
GAGATTCTTTTACGCCTGACTGAAG
LOC_Os05g03200
Os.48994.1.A1_at--1042--10351Chr05:1273891..1273915 (25 bp)
TTTTACGCCTGACTGAAGAACCAGT
LOC_Os05g03200
Os.48994.1.A1_at--1125--8931Chr05:1273882..1273906 (25 bp)
TGACTGAAGAACCAGTCGTAGCGAT
LOC_Os05g03200
Os.48994.1.A1_at--478--10271Chr05:1273854..1273878 (25 bp)
TTTGAACATTTGAAGCGCCTTATGT
LOC_Os05g03200
Os.48994.1.A1_at--560--8991Chr05:1273844..1273868 (25 bp)
TGAAGCGCCTTATGTTCGTTCTTTC
LOC_Os05g03200
Os.48994.1.A1_at--1--8751NONE
TGTAAGATTTTACGCTGTATGCAGC
NONE
Os.48994.1.A1_at--457--6911Chr05:1273774..1273793 (20 bp)
GTATGCAGCATTATAACTTAGATGT
LOC_Os05g03200
Target Sequence 
TCAAGATGTTGCTGACTAAAAAACAAATGTAGCATTGAAGATTGCTATAGGTCAAAGTTTAGTGAGATTCTTTTACGCCT
GACTGAAGAACCAGTCGTAGCGATGAATTTGAACATTTGAAGCGCCTTATGTTCGTTCTTTCATTTGTTCTTCTTGTTCT
TTGATGATGATATGTAGATCAATGTAAGATTTTACGCTGTATGCAGCATTATAACTTAGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48994.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis