Browse Element(s) Details


OsAffx.4239.1.S1_at

Description tigr:9633.m00247
TID=OsAffx.4239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0324011/11hypothetical protein
LOC_Os05g244301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03190Os.11677.1.S1_x_at10/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03190Os.11677.2.S1_at7/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03200OsAffx.4238.1.S1_at11/115+1273739..1276638expressed protein
LOC_Os05g03200Os.48994.1.A1_at10/115+1273739..1276638expressed protein
LOC_Os05g03210Os.52836.1.S1_at11/115+1278471..1280225F-box domain containing protein, expressed
LOC_Os05g03220NANA5+1281779..1283008retrotransposon protein, putative, unclassified
LOC_Os05g03230OsAffx.21465.1.S1_x_at2/115+1284947..1286285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03240OsAffx.4239.1.S1_at11/115+1288595..1289616hypothetical protein
LOC_Os05g03250NANA5+1291974..1293965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03260NANA5+1295248..1295865hypothetical protein
LOC_Os05g03270Os.47463.1.S1_x_at6/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03270Os.14491.2.S1_x_at5/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03280Os.46053.2.S1_x_at10/115+1306554..1309786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03290NANA5+1310987..1314318transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4239.1.S1_at--355--5651Chr05:1289256..1289280 (25 bp)
GACAGTCGATTCATCTGTGACTACA
LOC_Os05g03240
OsAffx.4239.1.S1_at--1089--5612Chr05:1289281..1289305 (25 bp)
GACAAAGATGAACCTACTACTACTA
LOC_Os05g03240
OsAffx.4239.1.S1_at--507--8871Chr05:1289316..1289340 (25 bp)
TGATGAGTTTGACCCATGGAACCCT
LOC_Os05g03240
OsAffx.4239.1.S1_at--937--5611Chr05:1289359..1289383 (25 bp)
GACAACCCTGATTCAGCAATGTGCT
LOC_Os05g03240
OsAffx.4239.1.S1_at--167--2991Chr05:1289376..1289400 (25 bp)
AATGTGCTATACTCCATCAGTTCTC
LOC_Os05g03240
OsAffx.4239.1.S1_at--312--411Chr05:1289391..1289415 (25 bp)
ATCAGTTCTCCTAGAGTCCTTGTTT
LOC_Os05g03240
OsAffx.4239.1.S1_at--201--3531Chr05:1289432..1289456 (25 bp)
CATGCATGCATTTCGTTTTTCAGTA
LOC_Os05g03240
OsAffx.4239.1.S1_at--345--3571Chr05:1289475..1289499 (25 bp)
CATACTTACAGAGTCCAGGCTTACA
LOC_Os05g03240
OsAffx.4239.1.S1_at--720--8251Chr05:1289492..1289516 (25 bp)
GGCTTACAAACATAATCACCCCAGA
LOC_Os05g03240
OsAffx.4239.1.S1_at--987--1371Chr05:1289514..1289538 (25 bp)
AGAGCGCACTCCTAAGGTTCTTGGC
LOC_Os05g03240
OsAffx.4239.1.S1_at--991--9771Chr05:1289526..1289550 (25 bp)
TAAGGTTCTTGGCTCACTTCATCTC
LOC_Os05g03240
Target Sequence 
GACAGTCGATTCATCTGTGACTACAGACAAAGATGAACCTACTACTACTACTACTGCTGCTGATGAGTTTGACCCATGGA
ACCCTCCACTTCCGCCGCCTCCTGACAACCCTGATTCAGCAATGTGCTATACTCCATCAGTTCTCCTAGAGTCCTTGTTT
TTTACTGGGTTTCCAACATGCATGCATTTCGTTTTTCAGTATGCAGATGTAACAGAGGACATACTTACAGAGTCCAGGCT
TACAAACATAATCACCCCAGAGCGCACTCCTAAGGTTCTTGGCTCACTTCATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis