Browse Element(s) Details


OsAffx.4238.1.S1_at

Description tigr:9633.m00241
TID=OsAffx.4238.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0320011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03174Os.20262.1.S1_at10/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03174Os.52448.2.S1_at3/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03190Os.11677.1.S1_x_at10/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03190Os.11677.2.S1_at7/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03200OsAffx.4238.1.S1_at11/115+1273739..1276638expressed protein
LOC_Os05g03200Os.48994.1.A1_at10/115+1273739..1276638expressed protein
LOC_Os05g03210Os.52836.1.S1_at11/115+1278471..1280225F-box domain containing protein, expressed
LOC_Os05g03220NANA5+1281779..1283008retrotransposon protein, putative, unclassified
LOC_Os05g03230OsAffx.21465.1.S1_x_at2/115+1284947..1286285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03240OsAffx.4239.1.S1_at11/115+1288595..1289616hypothetical protein
LOC_Os05g03250NANA5+1291974..1293965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03260NANA5+1295248..1295865hypothetical protein
LOC_Os05g03270Os.47463.1.S1_x_at6/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03270Os.14491.2.S1_x_at5/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4238.1.S1_at--583--10211Chr05:1275581..1275605 (25 bp)
TATTGATGAACTCCGAATGCCTCCA
LOC_Os05g03200
OsAffx.4238.1.S1_at--908--591Chr05:1275565..1275589 (25 bp)
ATGCCTCCAGATGGTATTTCAGTCC
LOC_Os05g03200
OsAffx.4238.1.S1_at--361--191Chr05:1275550..1275574 (25 bp)
ATTTCAGTCCATCCTATCCTGGTGG
LOC_Os05g03200
OsAffx.4238.1.S1_at--44--1711Chr05:1275506..1275530 (25 bp)
ACCAACAGTTCCCTTAGAAGCACAA
LOC_Os05g03200
OsAffx.4238.1.S1_at--1080--5211Chr05:1274685..1274709 (25 bp)
GAATTTCTTCAGCTATTTTGACCTG
LOC_Os05g03200
OsAffx.4238.1.S1_at--611--8531Chr05:1274662..1274686 (25 bp)
TGGACCCCGGTTACTTGTTATCAGA
LOC_Os05g03200
OsAffx.4238.1.S1_at--955--1971Chr05:1274302..1274326 (25 bp)
ACTACCACGGTCTCAGGAACAGCTG
LOC_Os05g03200
OsAffx.4238.1.S1_at--100--4831Chr05:1274151..1274175 (25 bp)
GCTACAAGCGGACAATTCCCTGCTT
LOC_Os05g03200
OsAffx.4238.1.S1_at--790--5231Chr05:1274123..1274147 (25 bp)
GAATACCAGTTCTCTTATGATGCTA
LOC_Os05g03200
OsAffx.4238.1.S1_at--1062--4851Chr05:1274102..1274126 (25 bp)
GCTAGGTGGCTCAAGGATCAATTTC
LOC_Os05g03200
OsAffx.4238.1.S1_at--597--5331Chr05:1274075..1274099 (25 bp)
GAAGTCCTCAGCTTCTGGCAAGGAG
LOC_Os05g03200
Target Sequence 
TATTGATGAACTCCGAATGCCTCCAGATGGTATTTCAGTCCATCCTATCCTGGTGGATACAAAGACACGTTACAAACCAA
CAGTTCCCTTAGAAGCACAAAAAAGAAATGGAAGGCTTCAGGTGATGTGTTACAAGTATCTATGGGACAATTTGATCAGT
GAGAAATTCCCAGCAGAGAATTTCTTCAGCTATTTTGACCTGGACCCCGGTTACTTGTTATCAGACGATATCAAGCAATA
CATTAGATTGTTGGGGCTCAATGCAAAGACCTTAGAAGATGTATTGAAATATTTCAAGGTCACCTGCCATACACTACCAC
GGTCTCAGGAACAGCTGCTCTTGAGATATGAGCTACAAGCGGACAATTCCCTGCTTGAAGAATACCAGTTCTCTTATGAT
GCTAGGTGGCTCAAGGATCAATTTCAGGAAGTCCTCAGCTTCTGGCAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis