Browse Element(s) Details


Os.35209.1.S1_s_at

Description gb:AK068516.1
DB_XREF= gi:32978534
TID=Os.35209.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151M14, full insert sequence.
FL= gb:AK068516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0314011/11senescence-associated family protein, putative, expressed
LOC_Os03g060901/11high-affinity nickel-transport family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed
LOC_Os05g03110OsAffx.14522.1.S1_at11/115+1209039..1210523PWWP domain containing protein, expressed
LOC_Os05g03120Os.51828.1.S1_at11/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120Os.51828.2.S1_x_at6/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120OsAffx.19113.1.A1_at1/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03130OsAffx.14523.1.S1_s_at11/115+1224313..1225030expressed protein
LOC_Os05g03140Os.35209.1.S1_s_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03140Os.53955.1.S1_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03150OsAffx.26707.1.S1_at9/115+1238093..1239939expressed protein
LOC_Os05g03160NANA5+1244665..1245102hypothetical protein
LOC_Os05g03174Os.20262.1.S1_at10/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03174Os.52448.2.S1_at3/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0015675biological_processnickel ion transport
GO:0016021cellular_componentintegral to membrane
GO:0015099molecular_functionnickel ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35209.1.S1_s_at--229--10691Chr05:1236171..1236195 (25 bp)
TTCCAGTGTGACTCCTGCAAGGCAG
LOC_Os05g03140
Os.35209.1.S1_s_at--211--911Chr05:1236194..1236218 (25 bp)
AGGCGTCCTCGCTGGCATCAAGAAG
LOC_Os05g03140
Os.35209.1.S1_s_at--921--2771Chr05:1236216..1236240 (25 bp)
AAGAGCTGGCGTAAGGTTGCCATCC
LOC_Os05g03140
Os.35209.1.S1_s_at--235--571Chr05:1236261..1236285 (25 bp)
ATCCTCGTCATCGTGTATGTTGCTG
LOC_Os05g03140
Os.35209.1.S1_s_at--709--7991Chr05:1236346..1236370 (25 bp)
GGATGACCAAGACTCAACCTAGCAG
LOC_Os05g03140
Os.35209.1.S1_s_at--1127--5331Chr05:1236390..1236414 (25 bp)
GAAGAACTGGGAGCCTTTGCCCCTT
LOC_Os05g03140
Os.35209.1.S1_s_at--362--10711Chr05:1236406..1236430 (25 bp)
TTGCCCCTTTGCCTGTACAAAAAGA
LOC_Os05g03140
Os.35209.1.S1_s_at--1029--3171Chr05:1236435..1236459 (25 bp)
AATTGGTGGTGCTAAGGCTCTGTCT
LOC_Os05g03140
Os.35209.1.S1_s_at--289--9472Chr05:1236550..1236574 (25 bp)
TCTGGTTTGGTTTTGTGCTTGCTAT
LOC_Os05g03140
Os.35209.1.S1_s_at--592--1331Chr05:1236632..1236656 (25 bp)
AGAGTAGTTCCCTCATTTAGCAATG
LOC_Os05g03140
Os.35209.1.S1_s_at--341--751Chr05:1236731..1236755 (25 bp)
ATGTATTGCTCTGTAGTTCCTTCTC
LOC_Os05g03140
Target Sequence 
TTCCAGTGTGACTCCTGCAAGGCAGGCGTCCTCGCTGGCATCAAGAAGAGCTGGCGTAAGGTTGCCATCCNTCAACATCG
TCGTGCTGATCATCCTCGTCATCGTGTATGTTGCTGGCTGTGCCGCTTTCCGCAACGCCAGGAGGATCGAAAACGACGAG
CCGTTTGGTATGGCAAGGATGACCAAGACTCAACCTAGCAGGTTCCAGTTCTGAGATAGTGAAGAACTGGGAGCCTTTGC
CCCTTTGCCTGTACAAAAAGACCACAATTGGTGGTGCTAAGGCTCTGTCTGAATCTCTTATATATTATTTACTGGAATGT
GGAATCAGCTACACTTTGGGTGGTGAAAAAGGAAAGTAGTTCTTGTTTCAGAATGTTCAGTCTGGTTTGGTTTTGTGCTT
GCTATAGTGTTTANGGNTAGGTCTGTTGTGTACTGGGTACAAGATGAGATCTGCAAGAAACAAGAGTAGTTCCCTCATTT
AGCAATGTATTGTGCTGTACCATTGGAGATTTTGATTTGGCATAATCTTAGATGAATATGTTATCATCATGTACATGATG
AATGTATTGCTCTGTAGTTCCTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35209.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis