Browse Element(s) Details


Os.11892.1.S1_at

Description gb:AK069401.1
DB_XREF= gi:32979425
TID=Os.11892.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014J19, full insert sequence.
FL= gb:AK069401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1668011/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed
LOC_Os01g16680Os.47508.1.A1_s_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680OsAffx.2475.1.S1_x_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680Os.11892.1.S1_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16690NANA1+9477984..9480122retrotransposon protein, putative, unclassified
LOC_Os01g16700NANA1+9480813..9482828retrotransposon protein, putative, LINE subclass
LOC_Os01g16714Os.56223.1.S1_at11/111+9485603..9490742Flavin-binding monooxygenase-like family protein, expressed
LOC_Os01g16730OsAffx.26706.1.S1_x_at9/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.3.S1_x_at8/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.1.S1_at1/111+9493555..9499714hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11892.1.S1_at--1037--5311Chr01:9471267..9471291 (25 bp)
GAAGTGGTCAGAGCAATCGAAACAA
LOC_Os01g16680
Os.11892.1.S1_at--36--5191Chr01:9471279..9471303 (25 bp)
GCAATCGAAACAATGACAGGAGCTT
LOC_Os01g16680
Os.11892.1.S1_at--308--3011Chr01:9471290..9471314 (25 bp)
AATGACAGGAGCTTACAATGTTTGG
LOC_Os01g16680
Os.11892.1.S1_at--442--9771Chr01:9471354..9471378 (25 bp)
TAATGGATCAGTCCTACCCTTTTTT
LOC_Os01g16680
Os.11892.1.S1_at--210--3751Chr01:9471381..9471405 (25 bp)
CCCTTTGAAGACTAGGTCCGACGCT
LOC_Os01g16680
Os.11892.1.S1_at--376--7791Chr01:9471395..9471419 (25 bp)
GGTCCGACGCTAAAAGTTGGCTTCT
LOC_Os01g16680
Os.11892.1.S1_at--843--6611Chr01:9471410..9471434 (25 bp)
GTTGGCTTCTGTTACGCAGGATTCA
LOC_Os01g16680
Os.11892.1.S1_at--1007--4091Chr01:9471424..9471562 (25 bp)
CGCAGGATTCAGGATGCCTAAAAAG
LOC_Os01g16680
Os.11892.1.S1_at--414--2751Chr01:9471560..9471584 (25 bp)
AAGAAGCCTAGCCACTGATGTCAGA
LOC_Os01g16680
Os.11892.1.S1_at--684--3331Chr01:9471572..9471596 (25 bp)
CACTGATGTCAGAGTTTGCCGAATG
LOC_Os01g16680
Os.11892.1.S1_at--1098--1911Chr01:9471814..9471838 (25 bp)
ACGGTGATTTTGTAAGCAGGATTTT
LOC_Os01g16680
Target Sequence 
GAAGTGGTCAGAGCAATCGAAACAATGACAGGAGCTTACAATGTTTGGAAAAATCATGAGGTGGTACACTGAAGAAACAG
AAATGCATAATGGATCAGTCCTACCCTTTTTTTNCCCCTTTGAAGACTAGGTCCGACGCTAAAAGTTGGCTTCTGTTACG
CAGGATTCAGGATGCCTAAAAAGAAGCCTAGCCACTGATGTCAGAGTTTGCCGAATGNCCAGGTTTGCGTCTCTTGGTGT
GCNAGAGNTTTTTGTTGTATGCCNAGTGTTACTTCTCTTTCTCACANNCANAAAAAAAAANGGTGTGCATAGATCCAATG
GTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTG
GCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTTTGTAAGCAGGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis