Browse Element(s) Details


OsAffx.2475.1.S1_x_at

Description tigr:9629.m07418
TID=OsAffx.2475.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1668011/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed
LOC_Os01g16680Os.47508.1.A1_s_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680OsAffx.2475.1.S1_x_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680Os.11892.1.S1_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16690NANA1+9477984..9480122retrotransposon protein, putative, unclassified
LOC_Os01g16700NANA1+9480813..9482828retrotransposon protein, putative, LINE subclass
LOC_Os01g16714Os.56223.1.S1_at11/111+9485603..9490742Flavin-binding monooxygenase-like family protein, expressed
LOC_Os01g16730OsAffx.26706.1.S1_x_at9/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.3.S1_x_at8/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.1.S1_at1/111+9493555..9499714hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2475.1.S1_x_at--1027--9791Chr01:9467568..9467592 (25 bp)
TAACCGCGCAGCTGCTTACCAAGCA
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--281--1531Chr01:9467616..9467640 (25 bp)
AGCAGATTGCTCACTAGCCATAGCC
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--580--291Chr01:9467635..9467659 (25 bp)
ATAGCCCTTGACTCCAATTATTCTA
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--847--5811Chr01:9468146..9468170 (25 bp)
GATCTTCGTAGGTTAATTTCTCTTC
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--395--2271Chr01:9468212..9468236 (25 bp)
AAATCAGATGGTATTCGCAGCAGTC
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--1100--2611Chr01:9468239..9468263 (25 bp)
AACCGATCCAATCTTAGGCTTTCTG
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--1024--10091Chr01:9468253..9468277 (25 bp)
TAGGCTTTCTGCTTTGGAGCGGGAT
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--427--5431Chr01:9469344..9469368 (25 bp)
GAACCATCTTGCACTTTCTTGGATA
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--83--5311Chr01:9469373..9469397 (25 bp)
GAAGGCATACCGCAAAGCAGCACTA
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--619--5051Chr01:9469389..9469413 (25 bp)
GCAGCACTAAGGCATCATCCAGACA
LOC_Os01g16680
OsAffx.2475.1.S1_x_at--58--1551Chr01:9469598..9469622 (25 bp)
AGCATATGCTATACTTTCGGACCCT
LOC_Os01g16680
Target Sequence 
TAACCGCGCAGCTGCTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACT
CCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGGCAGGGAATGATCTT
CGTAGGTTAATTTCTCTTCTTGAGAGACAGCTTCAAGAAAATATATACACGCCTTCAGAAAAATCAGATGGTATTCGCAG
CAGTCTGAACCGATCCAATCTTAGGCTTTCTGCTTTGGAGCGGGATGCCAAGAAGGGGATCTCACTGAATGTATATTTGA
TACTAGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGGCATACCGCAAAGCAGCACTAAGGCATCATCCAGAC
AAAGCTGGTAATTTTCTTGTGAGAAGTGAAAATATCAACGATGCAGTGTGGAGAGATATTGCTAATGACATCCGCAAAGA
TGCTGACTATCTATTCAAACTAATTGGGAAAGCATATGCTATACTTTCGGACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2475.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis