Browse Element(s) Details


Os.39278.1.A1_at

Description gb:AK120363.1
DB_XREF= gi:37989986
TID=Os.39278.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.39278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068G21, full insert sequence.
FL= gb:AK120363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0124011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01190OsAffx.16772.1.S1_at11/118+132109..132924uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os08g01200OsAffx.28971.1.S1_at11/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.28971.2.S1_x_at8/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.29536.5.S1_x_at1/118+135650..137878hypothetical protein
LOC_Os08g01210OsAffx.5674.1.S1_at11/118+141542..142108Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01220Os.9488.1.S1_at11/118+145561..147105Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01230NANA8+148536..150233hypothetical protein
LOC_Os08g01240Os.39278.1.A1_at11/118+152768..153560expressed protein
LOC_Os08g01240Os.247.1.S1_at1/118+152768..153560expressed protein
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01280OsAffx.28973.1.S1_at11/118+176623..178954ACT domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39278.1.A1_at--999--4691Chr08:153037..153061 (25 bp)
GCGGCTGCAGCTAATCGAGATCTAC
LOC_Os08g01240
Os.39278.1.A1_at--511--10491Chr08:153087..153111 (25 bp)
TTAACATCGTCAGGGACCAGCTCTC
LOC_Os08g01240
Os.39278.1.A1_at--584--6351Chr08:153116..153140 (25 bp)
GATCCACCGCTGTACAACGTGGAGT
LOC_Os08g01240
Os.39278.1.A1_at--225--6131Chr08:153137..153161 (25 bp)
GAGTGGGTGAATGGCACCTCCTACC
LOC_Os08g01240
Os.39278.1.A1_at--530--7251Chr08:153268..153292 (25 bp)
GTCCGCTGGATATTCAACGGCAATA
LOC_Os08g01240
Os.39278.1.A1_at--654--9951Chr08:153291..153315 (25 bp)
TACGCGGCATGTGCTCGTGTTCGAA
LOC_Os08g01240
Os.39278.1.A1_at--908--5411Chr08:153313..153337 (25 bp)
GAAGCCGGTGTAATCCTCCAAGTGG
LOC_Os08g01240
Os.39278.1.A1_at--6--9751Chr08:153366..153390 (25 bp)
TCAATAATCTCGTCGCTCGATCGAT
LOC_Os08g01240
Os.39278.1.A1_at--928--1951Chr08:153414..153438 (25 bp)
ACTGTGATCAGGTTCGCATGCATAT
LOC_Os08g01240
Os.39278.1.A1_at--58--6471Chr08:153493..153517 (25 bp)
GATCAATATATCCTGTGCACGCGCG
LOC_Os08g01240
Os.39278.1.A1_at--481--3351Chr08:153510..153534 (25 bp)
CACGCGCGTACAACTTACTGAGTAT
LOC_Os08g01240
Target Sequence 
GCGGCTGCAGCTAATCGAGATCTACTACGACTGGCCGCATGGCCGCGACCTTAACATCGTCAGGGACCAGCTCTCCGGCG
ATCCACCGCTGTACAACGTGGAGTGGGTGAATGGCACCTCCTACCTCTTCGACACCGCCGNCTCCAGCTGCCGCACCTTC
CAGTTCCCCGTCGGCATCCTGCCTCGATCGGGCGTGACACCGTGGACGCCGACGTCGCCACTGGCCGCCCCGTCCGCTGG
ATATTCAACGGCAATACGCGGCATGTGCTCGTGTTCGAAGCCGGTGTAATCCTCCAAGTGGCAGGCGCCGCCGTANNNNT
TCCTCAACCTCAATAATCTCGTCGCTCGATCGATCTCGCTGCCTCANNATTATATTAACTGTGATCAGGTTCGCATGCAT
ATATATTGGACCAGCTGATGATTATATCCACCCATCGATCAANTCATNCCAAAGTCGATCAATATATCCTGTGCACGCGC
GTACAACTTACTGAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39278.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis