Browse Element(s) Details


Os.9488.1.S1_at

Description gb:AK099239.1
DB_XREF= gi:32984448
TID=Os.9488.1
CNT=62
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.9488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116B02, full insert sequence.
FL= gb:AK104488.1 gb:AK061780.1 gb:AK099239.1 gb:AK061430.1 gb:AK067526.1 gb:AK072003.1 gb:AK061546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0122011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01190OsAffx.16772.1.S1_at11/118+132109..132924uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os08g01200OsAffx.28971.1.S1_at11/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.28971.2.S1_x_at8/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.29536.5.S1_x_at1/118+135650..137878hypothetical protein
LOC_Os08g01210OsAffx.5674.1.S1_at11/118+141542..142108Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01220Os.9488.1.S1_at11/118+145561..147105Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01230NANA8+148536..150233hypothetical protein
LOC_Os08g01240Os.39278.1.A1_at11/118+152768..153560expressed protein
LOC_Os08g01240Os.247.1.S1_at1/118+152768..153560expressed protein
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9488.1.S1_at--463--2571Chr08:146104..146128 (25 bp)
AACGGCTACTTCAGGTTCCAGCGAG
LOC_Os08g01220
Os.9488.1.S1_at--344--9751Chr08:145993..146017 (25 bp)
TAATTCTCCTCCTTCCATATATAAT
LOC_Os08g01220
Os.9488.1.S1_at--418--10731Chr08:145969..145993 (25 bp)
TTGCTTGCTTAATTGATCGATCTAC
LOC_Os08g01220
Os.9488.1.S1_at--340--9891Chr08:145947..145971 (25 bp)
TACATTCTACAAGCACAGCCCTGAT
LOC_Os08g01220
Os.9488.1.S1_at--458--2351Chr08:145904..145928 (25 bp)
AAAGCTCAGCTCAACTGATCGAGTG
LOC_Os08g01220
Os.9488.1.S1_at--384--6171Chr08:145880..145904 (25 bp)
GAGGATCGGAGTAATCTTGCATATA
LOC_Os08g01220
Os.9488.1.S1_at--146--10731Chr08:145864..145888 (25 bp)
TTGCATATATGCCTGCCACCAGTGG
LOC_Os08g01220
Os.9488.1.S1_at--668--4411Chr08:145850..145874 (25 bp)
GCCACCAGTGGTTTTATGTATTTAC
LOC_Os08g01220
Os.9488.1.S1_at--81--7851Chr08:145770..145794 (25 bp)
GGTACTACGTACAGTGCCATGCTTG
LOC_Os08g01220
Os.9488.1.S1_at--259--9071Chr08:145751..145775 (25 bp)
TGCTTGTGGCTAGCTGCATGGTTCA
LOC_Os08g01220
Os.9488.1.S1_at--1--7891Chr08:145732..145756 (25 bp)
GGTTCAGGTGTACAGCTACTTGTAG
LOC_Os08g01220
Target Sequence 
AACGGCTACTTCAGGTTCCAGCGAGCCGCCGCCTGCGTCGTCGACGTCTGATCCATCCATCCATCTCCTCATCCTCCTCT
CATGCATCCAACAAATCATATCATCCTTAATTAATTCTCCTCCTTCCATATATAATTGCTTGCTTAATTGATCGATCTAC
ATTCTACAAGCACAGCCCTGATGAAGAAGCTATATAATTAAAAGCTCAGCTCAACTGATCGAGTGAGGATCGGAGTAATC
TTGCATATATGCCTGCCACCAGTGGTTTTATGTATTTACAGTACGAATTAATTTGACCTTTTTCTTACTTAATTTTCATG
CCTGTGTTTTTTTTTGGTACTACGTACAGTGCCATGCTTGTGGCTAGCTGCATGGTTCAGGTGTACAGCTACTTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis