Browse Element(s) Details


OsAffx.16772.1.S1_at

Description tigr:9636.m00019
TID=OsAffx.16772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0119011/11uncharacterized plant-specific domain TIGR01568 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01180Os.11033.1.S1_at11/118+108885..114704Nicalin precursor, putative, expressed
LOC_Os08g01190OsAffx.16772.1.S1_at11/118+132109..132924uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os08g01200OsAffx.28971.1.S1_at11/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.28971.2.S1_x_at8/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.29536.5.S1_x_at1/118+135650..137878hypothetical protein
LOC_Os08g01210OsAffx.5674.1.S1_at11/118+141542..142108Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01220Os.9488.1.S1_at11/118+145561..147105Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01230NANA8+148536..150233hypothetical protein
LOC_Os08g01240Os.39278.1.A1_at11/118+152768..153560expressed protein
LOC_Os08g01240Os.247.1.S1_at1/118+152768..153560expressed protein
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16772.1.S1_at--251--3411Chr08:132325..132349 (25 bp)
CAGCAGACGATGATGAAGACCATGA
LOC_Os08g01190
OsAffx.16772.1.S1_at--341--8991Chr08:132338..132362 (25 bp)
TGAAGACCATGAACTCCGCTTACTT
LOC_Os08g01190
OsAffx.16772.1.S1_at--1124--8971Chr08:132347..132371 (25 bp)
TGAACTCCGCTTACTTATCCGCGGG
LOC_Os08g01190
OsAffx.16772.1.S1_at--790--5811Chr08:132484..132508 (25 bp)
GACCGCCTCTTTTTTGACCCTGACG
LOC_Os08g01190
OsAffx.16772.1.S1_at--651--4391Chr08:132547..132571 (25 bp)
GCCAAGGCCAATAAGACGAAGAAGA
LOC_Os08g01190
OsAffx.16772.1.S1_at--246--4611Chr08:132592..132616 (25 bp)
GCGACGGCGATGACCATCGAGTCGT
LOC_Os08g01190
OsAffx.16772.1.S1_at--75--8931Chr08:132602..132626 (25 bp)
TGACCATCGAGTCGTCGAACCCGTA
LOC_Os08g01190
OsAffx.16772.1.S1_at--271--9291Chr08:132728..132752 (25 bp)
TCCGGGCCAACGTCAAGAGCACACA
LOC_Os08g01190
OsAffx.16772.1.S1_at--395--3551Chr08:132759..132783 (25 bp)
CATCGTTGGCGCCTTCCTCGATTTG
LOC_Os08g01190
OsAffx.16772.1.S1_at--257--10671Chr08:132772..132796 (25 bp)
TTCCTCGATTTGCTCGTCTCTGCTG
LOC_Os08g01190
OsAffx.16772.1.S1_at--53--4691Chr08:132835..132859 (25 bp)
GCGGCCAAAGGCAAATATTCCTCTT
LOC_Os08g01190
Target Sequence 
CAGCAGACGATGATGAAGACCATGAACTCCGCTTACTTATCCGCGGGCTTCTCCTTCGCCTCTCGAGACAGCCACAGCTC
CACCTGCAGCTGCTGCAGGAGCAGGACGGCGTCCGACGCCTCGGCCTCCGCCGACGCCGTCACCCGCGCGCTGCGCTCCG
ACCGCCTCTTTTTTGACCCTGACGCGTCCCCGGCCGCCGCCGCCGACCTCAAGCTCAACAAGGCCAAGGCCAATAAGACG
AAGAAGAAGGTGGAGGCGTTCGGCGGGGCGACGGCGATGACCATCGAGTCGTCGAACCCGTACCGCGACTTCCGGGAGTC
GATGGAGGCGATGGTGACTAGCGGCGGCGGCGGCGGCGGCGCTGATGACTGGCGGTGGCTGGAGGAAATGCTGGGGTGGT
ACCTCCGGGCCAACGTCAAGAGCACACACGGCCTCATCGTTGGCGCCTTCCTCGATTTGCTCGTCTCTGCTGCCGCCTCG
CCAGCTGCTTCTTCTTCTTCCTCCTCTCCGGCGGCCAAAGGCAAATATTCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis